aacrgenie

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16.3.0 aacrgenie-16.3.0-py3-none-any.whl

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Project: aacrgenie
Version: 16.3.0
Filename: aacrgenie-16.3.0-py3-none-any.whl
Download: [link]
Size: 172376
MD5: 77f1c4dd00a8eda337af0e5a6a8122ad
SHA256: b9b3ca75a105b016d2ffa963f3745ef0f5a8b48acbd97a1f4e2976be9a055a17
Uploaded: 2024-03-20 21:38:57 +0000

dist-info

METADATA

Metadata-Version: 2.1
Name: aacrgenie
Version: 16.3.0
Summary: AACR Project GENIE ETL
Author: Thomas Yu
Author-Email: thomas.yu[at]sagebionetworks.org
Home-Page: https://github.com/Sage-Bionetworks/Genie
Project-Url: Bug Tracker, https://github.com/Sage-Bionetworks/Genie/issues
Project-Url: Source Code, https://github.com/Sage-Bionetworks/Genie
License: MIT
Classifier: Development Status :: 5 - Production/Stable
Classifier: Environment :: Console
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: MIT License
Classifier: Operating System :: OS Independent
Classifier: Programming Language :: Python
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3 :: Only
Classifier: Programming Language :: Python :: 3.8
Classifier: Programming Language :: Python :: 3.9
Classifier: Topic :: Scientific/Engineering
Platform: any
Requires-Python: <3.10,>=3.8
Requires-Dist: synapseclient (<3.0.0,>=2.7.0)
Requires-Dist: pandas (<1.5.0,>=1.0)
Requires-Dist: httplib2 (>=0.11.3)
Requires-Dist: PyYAML (>=5.1)
Requires-Dist: chardet (>=3.0.4)
Requires-Dist: pyranges (==0.0.115)
Requires-Dist: numpy (<=1.22.2)
Requires-Dist: pytest; extra == "dev"
Requires-Dist: black; extra == "dev"
Requires-Dist: pre-commit; extra == "dev"
Requires-Dist: mypy; extra == "dev"
Provides-Extra: dev
Description-Content-Type: text/markdown
License-File: LICENSE
[Description omitted; length: 7290 characters]

WHEEL

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Tag: py3-none-any

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top_level.txt

genie
genie_registry
tests

entry_points.txt

genie = genie.__main__:main