Reverse Dependencies of anndata
The following projects have a declared dependency on anndata:
- tacco — TACCO: Transfer of Annotations to Cells and their COmbinations
- tascCODA — Tree-aggregated compositional analysis for high-throughput sequencing data
- TESLAforST — TESLA: Deciphering tumor ecosystems at super-resolution from spatial transcriptomics
- tiledbsc — Python API for efficient storage and retrieval of single-cell data using TileDB
- tiledbsoma — Python API for efficient storage and retrieval of single-cell data using TileDB
- toomanycells — A python package for spectral clustering.
- topicvelo — TopicVelo: Dissection and Integration of Bursty Transcriptional Dynamics for Complex Systems
- torch-adata — torch-adata
- torch-pba — PyTorch implementation of PBA.
- trajectorama — Single-cell trajectory integration
- transmorph — A unifying data integration framework.
- transpa — Translation-based imputation and cell type deconvolution
- TRAPT — A novel deep learning framework for transcription regulators prediction via integraing large-scale epigenomic data.
- trisicell — Trisicell - Scalable tumor phylogeny reconstruction and validation from single-cell data
- trvae — Condition out-of-sample prediction
- ucdeconvolve — Cell Type Deconvolution For Transcriptomic Data
- uMAIA — Toolbox for the processing and analysis of MALDI-MSI data
- unitvelo — Temporally unified RNA velocity inference
- utrcalling — Package with tools to calculate molecule UTR sizes from RNA sequencing reads.
- vaeda — A computational tool for annotating doublets in scRNAseq data.
- vdata — no summary
- velocycle — Bayesian model for RNA velocity estimation of periodic manifolds
- velodyn — Dynamical systems approaches for RNA velocity analysis
- velovae — Bayesian Inference of RNA Velocity
- velovi — Estimation of RNA velocity with variational inference.
- vintools — vintools - Michael Vinyard's utilities.
- VIPCCA — single cell integration
- visionpy-sc — Signature Analysis and Visualization for Single-Cell RNA-seq
- visium_stitcher — Stitch multiple Visium slides together
- vitessce — Jupyter widget facilitating interactive visualization of spatial single-cell data with Vitessce
- voyagerpy — Python library for Voyager, the geo-spatialist R library.
- wot — Optimal transport for time-course single cell data
- xomx — xomx: a python library for computational omics
- xsc — xsc