ariba

View on PyPIReverse Dependencies (1)

2.14.6 ariba-2.14.6-cp37-cp37m-macosx_10_13_x86_64.whl

Wheel Details

Project: ariba
Version: 2.14.6
Filename: ariba-2.14.6-cp37-cp37m-macosx_10_13_x86_64.whl
Download: [link]
Size: 2940652
MD5: de9c0854af552e19d84b77481dda3e29
SHA256: 1950c4f67f9d090635dba1532c88439483549d63af7140c9cf3261a6ede1ada7
Uploaded: 2020-09-07 12:47:45 +0000

dist-info

METADATA

Metadata-Version: 2.1
Name: ariba
Version: 2.14.6
Summary: ARIBA: Antibiotic Resistance Identification By Assembly
Author: Martin Hunt
Author-Email: ariba-help[at]sanger.ac.uk
Home-Page: https://github.com/sanger-pathogens/ariba
License: GPLv3
Classifier: Development Status :: 4 - Beta
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: Programming Language :: Python :: 3 :: Only
Classifier: License :: OSI Approved :: GNU General Public License v3 (GPLv3)
Requires-Dist: BeautifulSoup4 (>=4.1.0)
Requires-Dist: biopython
Requires-Dist: dendropy (>=4.2.0)
Requires-Dist: pyfastaq (>=3.12.0)
Requires-Dist: pysam (>=0.9.1)
Requires-Dist: pymummer (<=0.10.3)
Requires-Dist: matplotlib (>=3.1.0)
[No description]

WHEEL

Wheel-Version: 1.0
Generator: bdist_wheel (0.33.1)
Root-Is-Purelib: false
Tag: cp37-cp37m-macosx_10_13_x86_64

RECORD

Path Digest Size
fermilite_ariba.cpython-37m-darwin.so sha256=dVLpM-POvGgznVAS4dNhcS6FPm38haPlzf6hhEedaV0 202848
minimap_ariba.cpython-37m-darwin.so sha256=7WRRsxP5KE7_tOMzsnjlrY8mL5FGn4VN-O3cIZ0G6wk 123808
vcfcall_ariba.cpython-37m-darwin.so sha256=lop2mh6NJ47DAP7gU4vpN1C62FUxbW_-5PCqepHAGxM 72192
ariba/__init__.py sha256=kESdQSF-Uepy9-mhF5FilbrZz0gfrL1qmfTlL4CkyJ0 1063
ariba/aln_to_metadata.py sha256=fJhTYx6adR-jSPzCtC2n1e0ikVgmqtwhU95EWivYksA 10940
ariba/assembly.py sha256=QCRdBxzTWG2ZtUUpc9tBLBm2bhfPjUjtNH_J62OzBnE 15099
ariba/assembly_compare.py sha256=MG_OLSMiip4xPI_6qDU29QIEXT1hsjgz19sVuqhX6Fo 16416
ariba/assembly_variants.py sha256=EUTkbirURIJ7RUbSo7ykYFVEvaOhSVdDKmJFjO1wFJM 15177
ariba/bam_parse.py sha256=mBjlrEtwaIF0UUhAuohXv4CewQAdusYxbwvQ_qr-st4 3586
ariba/card_record.py sha256=eYTKyXhyeUDGXHJN7_bvMlcmduea-1GS-poMmOgD2Zo 3328
ariba/cdhit.py sha256=D8MIT8ufTxdIquANMD0rl7U4LVHde1YF4Pad_jCgkhE 6274
ariba/cluster.py sha256=1WLzebYFDkF50gL8A7rGScapNV4xSCrKMACPeD4Gxqg 19456
ariba/clusters.py sha256=Te1ude93xON7D1NvT7AYO-p-nkwk4kyt4w5PSjS8E_A 28393
ariba/common.py sha256=UkX8lu-UPbZx4k2M3bxYiynsAGAePYGHi-R4okFI_Gk 2380
ariba/external_progs.py sha256=d_9G7u6sv4MX2SBZGi_VLO_XOV9nJp4jwywTtsNR4ns 5279
ariba/faidx.py sha256=jLGMh88TQE19oc1GpNpQNN7LpsxMd5ByyB0DJffeHcc 324
ariba/flag.py sha256=mtzfePuPrzSjNOah97h8ULNdRYbSHSmYrLSQtAs7HKw 1430
ariba/histogram.py sha256=3QPssE4u8hrY5b2Zhfef6mUjJ-bj7mXOaIzeqMC2OSI 1339
ariba/link.py sha256=wWOBkGBjjRGGzD0hok0fS6xMGYRNUKw1fmsLfPJZy68 3981
ariba/mapping.py sha256=-GV_3j0yymFpyyoKIDQn7UasIiOhvVni_654WxsofV4 5037
ariba/megares_data_finder.py sha256=fFQaqmvWPirz_DN7M8p3WnpQu8Dew5kQvMftYDOIbOw 2078
ariba/megares_zip_parser.py sha256=FUrLHj-3UjJ7tOTdGW1XXYVQv_S_w5q4s5GiN-BHDYI 6045
ariba/mic_plotter.py sha256=yIjOV2SG4LUz8NAgth3zBRiuS8L78AUksqjuZPRjOoo 25422
ariba/mlst_profile.py sha256=S2W1O5phpwlvsiZapuFea9vGQSLx9UHKpV1ct9Ix-NQ 2216
ariba/mlst_reporter.py sha256=HBvB05VHZ2SgD7VItNMRHJXyId8jnk7Pxj-bkQr6VJQ 3975
ariba/pubmlst_getter.py sha256=uio1PTefwUX81J6iJ76p1-C0VANuVf0JpjoF3o45OB0 4060
ariba/pubmlst_ref_preparer.py sha256=1LLuZtF76M2uakPzpOmJL4CqmENPf56i5UWFHtU0i-c 3850
ariba/read_filter.py sha256=V2ICeWZdmp18mfrT4vfMayskW7A8PRdrIhSC_e_5tqo 2508
ariba/read_store.py sha256=cxUsAyHcOqe4BGQEhWdtz6H8NacZPhB9ksjIVz2GiCw 2968
ariba/ref_genes_getter.py sha256=Uh7wRE0q_zs1Ce0eNMC2RzQoBH-lHrCV1vqo9GSqy_g 30576
ariba/ref_preparer.py sha256=oXuc_sz5Y9ICWRl_cUuZgUe08x7Zf1UgqCVi59KvVOM 8690
ariba/ref_seq_chooser.py sha256=3K8gkRYW_pXr1J1OPrKtulXY7IKuiL9m4SfjbPfGMn0 8370
ariba/refdata_query.py sha256=f2lkzo4mMEd8s-nKgA9anoZBRle0HzOjabaBhwJqyjw 3165
ariba/reference_data.py sha256=glLYh2On604E7mgBl5vnci6l0FwMqOO68BDvqblwlKY 19480
ariba/report.py sha256=gQ8GW-kX70DFU5smtRc53imaLhPwXzSk9wdR4OaUANI 18629
ariba/report_filter.py sha256=RYm4TvQBroHEtU9ga4l0Cevel6OA6Za4vNiKzPkaVSc 6965
ariba/report_flag_expander.py sha256=NFvISyXkM7W6CSQha-Eb_zxyLStgSFmauThDuX8RY1U 922
ariba/samtools_variants.py sha256=erey2dThU8Tm2-qCV9v8rXVyuvX5fPbn0vyJxHxN1A0 5974
ariba/scaffold_graph.py sha256=L3n6j-59EXDm0__0Lnl6sseOi83Lmgn8fJ47UZHs6b8 3466
ariba/sequence_metadata.py sha256=L-HWpqoB0SpbvFoyfy3eM456jKFiAUOAfbQlta-GO4Y 1992
ariba/sequence_variant.py sha256=28ivC03yOkjdW3rv60ypvptdyZfVLoFt0O3IgDguH0o 2544
ariba/summary.py sha256=NRbsJM05iLwcEIF8g76PZRqQ6CDr6VL3UFD6FC_TKW8 17649
ariba/summary_cluster.py sha256=qUItbnqRU7ux9vCCArxRiWWPsZJUJll91P7pxiBzKOw 13284
ariba/summary_cluster_variant.py sha256=1nMAmIf8ihPXp9NeMd3xZPurRSsAMHez15ex5rbLsaQ 6067
ariba/summary_sample.py sha256=l0dueSv2OG2Zv9qBhW2upk61peept2WuMJlPCx5uuGY 2654
ariba/tb.py sha256=d2ANzHUTJRWOEchXUYjyw7zqeIcwSeOydZ4L1JvPa9Y 9927
ariba/versions.py sha256=U22T3xCUofRwSOs6Cw6Tgypf6lRqT45peQ5VhCt6Olo 2213
ariba/vfdb_parser.py sha256=GpMRjhPp7BtsWOGrcweW5SIpdVAN31d41Ddm-MZBWfc 1609
ariba/tasks/__init__.py sha256=vwMm5nIDLpvEgVqHpCiDgPHglLXzIi6JkNzo92bir4g 284
ariba/tasks/aln2meta.py sha256=vP_hPenI2sZVYojX7piufFyRAy-1snpfBaPQMiaXlg4 327
ariba/tasks/expandflag.py sha256=a0s8PyvqPuFOHsJEuuPEuZvZUnKbTP_3IHHHRZptMZw 173
ariba/tasks/flag.py sha256=XL179kWB30qIINn92v7T5DuY7sTzcQIsGoEwQDJOI90 151
ariba/tasks/getref.py sha256=ftNBIWGRGKFyK-rPtW3BlQXGvy3x80F9LZ37WWDLiGw 239
ariba/tasks/micplot.py sha256=56Ia2RyEtv0OQ8ZH6QJ_58O0R48xD8fcZ1UP30ad-AE 1239
ariba/tasks/prepareref.py sha256=kxJ5KdVkzbB_YK_B9WGs-2fihb5Hur32zhT_LtJuKHI 1302
ariba/tasks/prepareref_tb.py sha256=6Exeh3CBIHcSmw4edX0G42QjSiMIxeryzzDNCwmGHWs 111
ariba/tasks/pubmlstget.py sha256=4vO03eKA13g0cJpd_axjr-p2mCqOb0sejqWgTywsBiw 238
ariba/tasks/pubmlstspecies.py sha256=mUaRwqDEWtIVy0CxEUDSWIX4BTwd_99m2DpvEbLjINs 151
ariba/tasks/refquery.py sha256=tQc9uoqg03-WiBu5PeXOi0NDcz2DRBZLmVBp1wYN1cs 200
ariba/tasks/reportfilter.py sha256=rw0k7oLz_JiQcz_ZYMS1S0kFJw8WafFaksLYXxme6CQ 825
ariba/tasks/run.py sha256=d16NYIqOVrjbOjqMNwN_aygyJRWZVFTbcvN33xIQgbs 2311
ariba/tasks/summary.py sha256=SXf0DStWgaRWmQ1aik-M4VRCYT2AaREh_sTpEgE-8yE 2356
ariba/tasks/test.py sha256=Vl0lOiFjAV5uxRipxZIShQXiIffliwiXMQAL_QGIwFs 2319
ariba/tasks/version.py sha256=7JoVOyZryS-cNicwqE1wHWmwIkUwKC5IxUIqbHWOb-Q 170
ariba/tb_data/NC_000962.3.fa.gz sha256=HUOf9bq-zDo2L7OuKEe3P-OPN-qoXX35W6PEku5bsNU 1284545
ariba/tb_data/NC_000962.3.gb sha256=spHE9O1Mm5nxCPmzw91_lIFhvcyyQodofV08wUdmTzQ 2917328
ariba/tb_data/panel.20181115.json sha256=efhjlMO-9p6YyoofONWnyxpEb3jWg1blTZnqD4O4yzE 3179910
ariba/tb_data/panel.20181115.txt sha256=uY7jWx8madUaZiD8YIQMotxl1yghzdCdPhSs8rSY-Ww 1100210
ariba/tb_data/panel.20181221.json sha256=6R7ZZ6dHavD20NLvZgHHIndqCEZASkibEDj6n6UCvHs 3179863
ariba/tb_data/panel.20181221.txt sha256=P1ab9uYNB_A4iUH9yqCSf0I0gDBrgSPKnln75hHzZdk 1100195
ariba/tb_data/panel.20190102.json sha256=ogmIm_z8HMPFxwWDhhSS4jEZOJdoMKbfSWvKNxWW--c 3179888
ariba/tb_data/panel.20190102.txt sha256=P1ab9uYNB_A4iUH9yqCSf0I0gDBrgSPKnln75hHzZdk 1100195
ariba/test_run_data/metadata.tsv sha256=GrS7WO89_We0DJbSFauAom8sIpZwuSu0hq_SNqVWKdY 1248
ariba/test_run_data/reads_1.fq sha256=ww3rqKkbNtkIMuZ09vWVXp6UHVeObu2sB4kCuUBHE6g 110844
ariba/test_run_data/reads_2.fq sha256=YOWNg8-2g4bBum3qiX_5Mv-_AMEqxIpo27r1RDM5nng 110844
ariba/test_run_data/ref_fasta_to_make_reads_from.fa sha256=Lp4M6I0ajpCX8iC8W4rSVP-YYlO4doYzaJFCNVbGN64 3573
ariba/test_run_data/ref_seqs.fa sha256=CUsuKwevPgPZ2wvYve5QNf1SBBHBaxzYn0282ZDGwkA 1394
ariba/tests/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
ariba/tests/aln_to_metadata_test.py sha256=GQx9X0jNso69J5VXsQ7z5xpOws4WsK9nkXIUwS5VdQA 17407
ariba/tests/assembly_compare_test.py sha256=hbpSpMgUUzXn0FO4lh0Oq4fuyA8W6naPN9fOEz2AIQM 20285
ariba/tests/assembly_test.py sha256=uw_3YQNqMsoin97oeq2eiCHUPszm_i8tGZpf2iGVBfY 7912
ariba/tests/assembly_variants_test.py sha256=ABAWuB3R4wIz-fCWag16Jzgfpv27rMqCD0h5cUXoedU 20039
ariba/tests/bam_parse_test.py sha256=xFKqo2jaZ_ljH-NrVEHK7BvSKRm8bs3cGIRurOSpFOw 5091
ariba/tests/card_record_test.py sha256=TiW6YZp_0NHFcQiDrWn4bugSlgMaXehp5cKPhglgRPU 8598
ariba/tests/cdhit_test.py sha256=u0EbRVi_LPYDk68uTV78FwM2Enjz-MewakVw6UicGjs 7820
ariba/tests/cluster_test.py sha256=-TymtVunwWE4fEf7CZL7pKXU_OkGt7a20t-bZZebY18 34821
ariba/tests/clusters_test.py sha256=AMIFNZnuDMYUSyRKJZ6x5D9bxtyT7C18K5wFF5ZsPWc 15487
ariba/tests/common_test.py sha256=e4MUgOw16-nQ8F0wWFN0twtOi55c_h8IBovgnFeCa5k 1095
ariba/tests/external_progs_test.py sha256=ue8NuDl0TMFdQbIzokWibjnx8RyjFWhGSA6XYH9e9QQ 236
ariba/tests/faidx_test.py sha256=TDsYA5iEoG0Ku8CoobkcuFQn7hvVKxZtchp4Uq891uk 732
ariba/tests/flag_test.py sha256=jGpXu1Zklosg8pXoW3qg2HEX8Jq2srjOGyoLbqmZbuU 2109
ariba/tests/histogram_test.py sha256=7uZjb03SELCZF2Wd2f8XbrQlrw1Us6uiVVAVkKeGMY8 1500
ariba/tests/link_test.py sha256=91xxalvqIt0NfARE3virBsH85PUbUPY-i8_CUaO7e3Y 5941
ariba/tests/mapping_test.py sha256=hnPm4D-7YruJ5G9fiX3B79IDULtJlKFL7cK0ELWmD14 5811
ariba/tests/megares_data_finder_test.py sha256=nLesse6x9fRqfHecgmo1FGbAEWVMIaNnk6-7WdXui-Y 1379
ariba/tests/megares_zip_parser_test.py sha256=qeiX3POD1GadODAd3veADCHFWUKaims-MlNbSD2YRLI 4211
ariba/tests/mic_plotter_test.py sha256=Gi2quR4Wfx7HPXV0qPN2wKumwe4t3__Xa969Cf4Iqzk 14919
ariba/tests/mlst_profile_test.py sha256=Wi8cp616NE4eqAjfYb-mc6pa6fXQy4ZtM2LwefwexF0 2587
ariba/tests/mlst_reporter_test.py sha256=daTrKV49s9T8_9iFdLXVFnZFnJ9SQnDpOfGH1PG2o5U 4757
ariba/tests/ncbi_getter_test.py sha256=NuAG_OfAYNhPA2orVlvHlK7v59N0GDVLK8lrwXrw1-4 524
ariba/tests/pubmlst_getter_test.py sha256=RBIaMneLI2UR1tVXQsa07k-GP_52XL-hLX2yO76btbo 2112
ariba/tests/pubmlst_ref_preparer_test.py sha256=L6cXcNJRzef916CsG9ExSshLgXlzICi3DnXCZiQOq70 2355
ariba/tests/read_filter_test.py sha256=Txy0wpZHNoTChO_V-ws2nnLgW6ZD1puyTSapQQ1TXvU 2688
ariba/tests/read_store_test.py sha256=kvvHK3-yrqnRaK7JhxYN233rqWBqQsecYVPpyOHFecA 5944
ariba/tests/ref_genes_getter_test.py sha256=onPk1zK1kcmYWw4YoXj0SxtaX45-xNY3ye2Owr9IJhM 836
ariba/tests/ref_preparer_test.py sha256=hxXnGisbziHb023lw-JBsWpX6ZAVVnCbN9GkXcyjQHA 7897
ariba/tests/ref_seq_chooser_test.py sha256=4hz-2ZSCoRhxOopI_aWARdH7Ef6O3y__cwF7qS8RREw 6631
ariba/tests/reference_data_test.py sha256=3OpaUaVK4ErHl3mjNL08Qum1Jr6X1OoSf0v9fwhXSa0 32281
ariba/tests/report_filter_test.py sha256=KbFwTINlO38KwIOWpSW8K5TfC9_-m5CI4PH7Kdk5_Vc 20926
ariba/tests/report_flag_expander_test.py sha256=gI5Pm4Wig30KzRlds8Jt0CewaUnlqOX5D5DlMWu8Da8 715
ariba/tests/samtools_variants_test.py sha256=6hinDFwUK1Qhbgoih-jDN4zPobs6jbK5C0UmtpqkJgg 6793
ariba/tests/scaffold_graph_test.py sha256=hgt7GNjEDX-DgXWQnNunAzdEqF6R2fp1zvkoBzVwkPI 4716
ariba/tests/sequence_metadata_test.py sha256=wOANoWmQxj_MHzGAXatSQCtxBNs2w7noZMYJonADKIY 3323
ariba/tests/sequence_variant_test.py sha256=zk7V8snBDUOMOdYen-vE2E1SO_rd2Qe2r5oAo8zk4Ss 3312
ariba/tests/summary_cluster_test.py sha256=T2_ZX0D0lC6uP1tH4YULqN2zS8RZ97EGtjys6F7P5Pw 39403
ariba/tests/summary_cluster_variant_test.py sha256=cNBKuk9FPkuIDaKk4vxYMrBEBDSU-GBSDDky8DCNnBE 10823
ariba/tests/summary_sample_test.py sha256=dx7z95l7RVq2PlQvAuhxkRJIQHnOJd5E5OjQwgXsDVM 4521
ariba/tests/summary_test.py sha256=A48kjRYI-SBzHq3v1rmLmx8EoGv7uGKs6yV9tp8_5zI 33085
ariba/tests/tb_test.py sha256=ZgzZc1UQzGWd2j4UJwqunjZW5oYkKV3QCN0BQACD27E 6244
ariba/tests/test_refdata_query.py sha256=3i2lhSEs2ac3TsdusCsT_CD9VcmQqhj91o-EPTX8_uA 3798
ariba/tests/versions_test.py sha256=6VA3C6VGlbznKhAD0ssOuP-oQJZszPE2M6Xdty5nwhk 197
ariba/tests/vfdb_parser_test.py sha256=xRw11eDN_oD-yDvvFkbxhF0HiPSbzPzlsm4JnAD_mUI 2562
ariba-2.14.6.data/scripts/ariba sha256=miBgvSGa7Hpatp5mTmvlQhE752V2RVyqmCHydp4qPFQ 26183
ariba-2.14.6.dist-info/AUTHORS sha256=kwVJN7bvmyDGvjwiLOt9MfeSO6tDqDoC40PcjbcaXAk 37
ariba-2.14.6.dist-info/LICENSE sha256=xz-_w9uM1jA3UeQINUUHjF7vr5Sp8oFVW-IKPfe2FE4 35213
ariba-2.14.6.dist-info/METADATA sha256=eHhcRjEz4tGrHhS38ccEv9Q_l-A-P3cdrfgi3L-YGU0 745
ariba-2.14.6.dist-info/WHEEL sha256=RRvoBjGSBWGSvOG2Ydig-4Us3kL0igx7zdRekTD06oU 111
ariba-2.14.6.dist-info/top_level.txt sha256=fm5G6Rmty_QbGQXzYd5YkjzBC3NpsIUGRi-pduzuLvo 50
ariba-2.14.6.dist-info/RECORD

top_level.txt

ariba
fermilite_ariba
minimap_ariba
vcfcall_ariba