bio

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1.7.0 bio-1.7.0-py3-none-any.whl

Wheel Details

Project: bio
Version: 1.7.0
Filename: bio-1.7.0-py3-none-any.whl
Download: [link]
Size: 279182
MD5: b5514e840d56ea5f26053e965e7178f2
SHA256: cda694d8ae05f5316f5010e025c028b0b95ddbada1d0a7f20a48c4b9801fc9c7
Uploaded: 2024-04-09 17:48:33 +0000

dist-info

METADATA

Metadata-Version: 2.3
Name: bio
Version: 1.7.0
Author-Email: Istvan Albert <istvan.albert[at]gmail.com>
Project-Url: Documentation, https://github.com/ialbert/bio#readme
Project-Url: Issues, https://github.com/ialbert/bio/issues
Project-Url: Source, https://github.com/ialbert/bio/
Classifier: Development Status :: 4 - Beta
Classifier: Programming Language :: Python
Classifier: Programming Language :: Python :: 3.10
Classifier: Programming Language :: Python :: 3.11
Classifier: Programming Language :: Python :: 3.12
Requires-Python: >=3.10
Requires-Dist: biopython (>=1.80)
Requires-Dist: gprofiler-official
Requires-Dist: mygene
Requires-Dist: pandas
Requires-Dist: pooch
Requires-Dist: requests
Requires-Dist: tqdm
Description-Content-Type: text/markdown
License-Expression: MIT
License-File: LICENSE
[Description omitted; length: 4796 characters]

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entry_points.txt

bio = biorun.__main__:run
fasta_filter.py = biorun.scripts.fasta_filter:run