biom3d

View on PyPIReverse Dependencies (0)

0.0.38 biom3d-0.0.38-py3-none-any.whl

Wheel Details

Project: biom3d
Version: 0.0.38
Filename: biom3d-0.0.38-py3-none-any.whl
Download: [link]
Size: 200109
MD5: fca709b36f3fcc75f863ccba64e92569
SHA256: 8868296cbfc515b230e6fe25fa3679023bb10c2a70d04304b528acdd7933d0c4
Uploaded: 2024-03-27 10:53:08 +0000

dist-info

METADATA

Metadata-Version: 2.1
Name: biom3d
Version: 0.0.38
Summary: Biom3d. Framework for easy-to-use biomedical image segmentation.
Author-Email: Guillaume Mougeot <guillaume.mougeot[at]laposte.net>
Project-Url: Homepage, https://github.com/GuillaumeMougeot/biom3d
Project-Url: Bug Tracker, https://github.com/GuillaumeMougeot/biom3d/issues
Keywords: deep learning,image segmentation,medical image analysis,medical image segmentation,biological image segmentation,bio-imaging
Classifier: Programming Language :: Python :: 3
Classifier: Operating System :: OS Independent
Requires-Python: >=3.7
Requires-Dist: torch (>1.10.0)
Requires-Dist: tqdm (>=4.62.3)
Requires-Dist: scikit-image (>=0.14)
Requires-Dist: scipy (>=1.9.1)
Requires-Dist: numpy (>=1.21.2)
Requires-Dist: SimpleITK (>=2.1.1)
Requires-Dist: pandas (>=1.4.0)
Requires-Dist: matplotlib (>=3.5.3)
Requires-Dist: tensorboard (>=2.8.0)
Requires-Dist: PyYAML (>=5.4)
Requires-Dist: torchio (>=0.18.84)
Requires-Dist: protobuf (>=3.19.3)
Requires-Dist: appdirs (>=1.4.4)
Requires-Dist: numba (>=0.56.4)
Requires-Dist: paramiko
Requires-Dist: netcat
Requires-Dist: tifffile
Requires-Dist: sphinx (>=4.1.2); extra == "docs"
Requires-Dist: sphinxcontrib-apidoc; extra == "docs"
Requires-Dist: sphinx-rtd-theme (>=0.3.1); extra == "docs"
Requires-Dist: myst-nb; extra == "docs"
Requires-Dist: furo (>=2022.06.21); extra == "docs"
Requires-Dist: docutils (>=0.17.1); extra == "docs"
Requires-Dist: omero-py; extra == "gui"
Provides-Extra: docs
Provides-Extra: gui
Description-Content-Type: text/markdown
License-File: LICENSE
[Description omitted; length: 5428 characters]

WHEEL

Wheel-Version: 1.0
Generator: bdist_wheel (0.43.0)
Root-Is-Purelib: true
Tag: py3-none-any

RECORD

Path Digest Size
biom3d/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
biom3d/auto_config.py sha256=N2SORtDBVElaAUZz66NUwmD0H_T4TlZbaRE6a4bighQ 15583
biom3d/builder.py sha256=Mpb6-uvrgESMPxzJWAN2VCBTk4E9BVnTGFmLSogz0fk 38070
biom3d/callbacks.py sha256=F5L0JFo0EjrzNPH2en_p73PzR2Ahi9PMS8jG3vdR5KI 34154
biom3d/config_default.py sha256=-8NGlTvPqDjjbHhuNG69JBJNK4LgSUTGEmFnojqG5sU 8580
biom3d/eval.py sha256=-4SGkBg2-X35H-RPBDVUD4xDVWAeWGJuBqo85pxPk_8 2064
biom3d/gui.py sha256=aastlZw-K92HPkndpJjEejFs5bqXnXvVLG3ic0nro84 107179
biom3d/logo_biom3d_minimal.png sha256=3X61BmLQR04u45s_k8Nbq73IAWJ1e0ilXtjlzJE17Hk 67995
biom3d/metrics.py sha256=ogOFDtg90edylF6gCd-9x8y26ZyqawNqJDowuWSIZYg 18599
biom3d/omero_downloader.py sha256=0bMxAYI6upjwQg0weBtU13gBkcGIE-SWJ6OeSw-OwOo 4577
biom3d/omero_pred.py sha256=yBTH6M4J7uS8TNQ-dhQWDzgZG_OEqqdhzcPcjAZI9F0 4216
biom3d/omero_uploader.py sha256=mfO-h8FVvDBRYsbxeXaHk-qOzr_fM6Yx_8HCABbS66M 7691
biom3d/pred.py sha256=_t5KyCk-bqq68I-fwxlmzeBYCtVJRWvET0XhUJ3ucIM 6844
biom3d/predictors.py sha256=3_XhZQIoPTuzufuHD_2usNeOAzOQyLuMyJeYGNmx4RE 21427
biom3d/preprocess.py sha256=qs26mSeWBt1b7eXdbjKzGHxjK1JhQsmjjSDjAFw9n9A 33991
biom3d/preprocess_train.py sha256=bYgjbLgOCsgxRhgcQTVnH_aXvSeUQiEj03ED2CXPBtw 3043
biom3d/register.py sha256=fR8TXZh075KuBaSoM9B1wprNYjlpVDQ7PxRE8bT1qmc 4641
biom3d/train.py sha256=eUmqatmpFyQY8cG6-ecV7jvqb61ckypeihdlhJSqFsI 10533
biom3d/trainers.py sha256=lcg0FR8Vwd2zb0IZjOBm67yNpBUz0b0C9xf8PhVs3ts 11576
biom3d/utils.py sha256=Ks99QNm2NsGP43gIEMoLjiXcXlaX5hJP86l8cv9Hw8Q 47299
biom3d/datasets/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
biom3d/datasets/semseg_batchgen.py sha256=VwUWgYkq5QiYGgyyP7OCSuC0vQQzRaV07ww30LAxIps 37301
biom3d/datasets/semseg_patch_fast.py sha256=6YkEUGyuIeLd_As678fjqB4UKBkBX5sHUvjuqSFERlM 20722
biom3d/datasets/semseg_torchio.py sha256=xlZWgyFfr0w9dsuGfQG7v7R_5km9BsGT8w-BKVpu6bQ 17841
biom3d/models/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
biom3d/models/decoder_vgg_deep.py sha256=m-OK4edn6_OeMp7cTvNN5ZiXZEMD0ADnc5AmSpBXrkU 6743
biom3d/models/encoder_vgg.py sha256=eOg0mXLKEEn9GS74NsJP751ZEuj5PV-fmwIN8Cz0txk 7853
biom3d/models/unet3d_vgg_deep.py sha256=2bweZYR0_PwnSOFBrk_ftfn9ZZ2rnuz2F3Ywr5tuPB8 4361
biom3d-0.0.38.dist-info/LICENSE sha256=xTplwv1WHIfqq_EHLvXcq4ZTBCvBUwhGX1JBNYXrYnE 35146
biom3d-0.0.38.dist-info/METADATA sha256=0XFrPYhpR4_HJR1P3YgCvyP5Qb8q5wVflqpAa0_Hlnc 6985
biom3d-0.0.38.dist-info/WHEEL sha256=GJ7t_kWBFywbagK5eo9IoUwLW6oyOeTKmQ-9iHFVNxQ 92
biom3d-0.0.38.dist-info/entry_points.txt sha256=42JNhrelZQmFHvq-pF00O-42Ykeq37KXLa6502ZIRRw 43
biom3d-0.0.38.dist-info/top_level.txt sha256=xxXdLS3AM4kAklveqR4S0sTXfk8elHI8WCAt5NCNOO4 7
biom3d-0.0.38.dist-info/RECORD

top_level.txt

biom3d

entry_points.txt

biom3d = biom3d.gui:main