Wheelodex » Projects » bpnet

bpnet

View on PyPI — Reverse Dependencies (0)

0.0.23 bpnet-0.0.23-py3-none-any.whl

Wheel Details

Project: bpnet
Version: 0.0.23
Filename: bpnet-0.0.23-py3-none-any.whl
Download: [link]
Size: 2774620
MD5: 61e1b0a7df0768263d824392bd68b0e3
SHA256: e7f24f87102d70268cff04bebf5a443bc3388f871aca53a01777d8938b8664c0
Uploaded: 2020-07-05 21:24:32 +0000

dist-info

METADATA · WHEEL · RECORD · top_level.txt · entry_points.txt

METADATA

Metadata-Version: 2.1
Name: bpnet
Version: 0.0.23
Summary: BPNet: toolkit to learn motif synthax from high-resolution functional genomics data using convolutional neural networks
Author: Ziga Avsec
Author-Email: avsec[at]in.tum.de
Home-Page: https://github.com/kundajelab/bpnet
License: MIT license
Keywords: deep learning,computational biology,bioinformatics,genomics
Requires-Dist: argh
Requires-Dist: attr
Requires-Dist: related
Requires-Dist: cloudpickle (>=1.0.0)
Requires-Dist: concise (>=0.6.7)
Requires-Dist: deepexplain
Requires-Dist: gin-config
Requires-Dist: keras (==2.2.4)
Requires-Dist: scikit-learn
Requires-Dist: h5py
Requires-Dist: numpy
Requires-Dist: pandas
Requires-Dist: scipy
Requires-Dist: statsmodels
Requires-Dist: matplotlib (>=3.0.2)
Requires-Dist: plotnine
Requires-Dist: seaborn
Requires-Dist: pybigwig
Requires-Dist: pybedtools
Requires-Dist: modisco (>=0.5.1.2)
Requires-Dist: joblib
Requires-Dist: kipoi (>=0.6.8)
Requires-Dist: kipoi-utils (>=0.3.0)
Requires-Dist: kipoiseq (>=0.2.2)
Requires-Dist: papermill
Requires-Dist: jupyter-client (>=6.1.2)
Requires-Dist: ipykernel
Requires-Dist: nbconvert (>=5.5.0)
Requires-Dist: vdom (>=0.6)
Requires-Dist: ipython
Requires-Dist: tqdm
Requires-Dist: pprint
Requires-Dist: genomelake
Requires-Dist: pysam
Requires-Dist: pytest (>=3.3.1); extra == "dev"
Requires-Dist: pytest-cov (>=2.6.1); extra == "dev"
Requires-Dist: gdown; extra == "dev"
Requires-Dist: virtualenv; extra == "dev"
Requires-Dist: comet-ml; extra == "extras"
Requires-Dist: wandb; extra == "extras"
Requires-Dist: fastparquet; extra == "extras"
Requires-Dist: python-snappy; extra == "extras"
Requires-Dist: ipywidgets; extra == "extras"
Provides-Extra: dev
Provides-Extra: extras
[No description]

WHEEL

Wheel-Version: 1.0
Generator: bdist_wheel (0.33.1)
Root-Is-Purelib: true
Tag: py3-none-any

RECORD

Path Digest Size
bpnet/BPNet.py sha256=cRyKLv2-r2Lx6oiKvSJ93cQihB-MsgrdBHvgd19kxao 18372
bpnet/__init__.py sha256=i7qQQeQNdZMReTTzFO5HPS_p_90Gn716MhN6kj0drC0 718
bpnet/__main__.py sha256=d9z6-m5BkTk_zFFlKU-qj9d6OGnIgmfLfQuuPRH-89Q 1099
bpnet/activations.py sha256=OhvMOjBEMT3R4yVXqKUfkHDUVAJ_OEPZFxCJGwmk8dw 697
bpnet/configurables.py sha256=54qTgc6ST9b5MR6-i9IWsjg1Cntyic_gQeLFgleBM7A 1844
bpnet/data.py sha256=RJKdw1iu3G-BFfGHEWgFN2jPOaQAEPq-mLCks1YvlqU 9557
bpnet/datasets.py sha256=eQAOQacSQQDivUyGHgrwJePpBm9C41SGybFLqB8RiP8 30262
bpnet/dataspecs.py sha256=Mk_xo3xJOjyOBfi6671guzETyzEBu_v5axFAQN6SkPA 6006
bpnet/extractors.py sha256=AQn8sQdK83t3KJsHW709mw41E9FgMuXRtYE_ak6CpY4 5925
bpnet/functions.py sha256=QEYwJzvyCJYEpB_5qK73tpIG8n04ZkJ0CfIZFHkEMZE 276
bpnet/heads.py sha256=bwxE6lm4VYGWi85H-KoI8jinOsuI7Z9EtsNqisWDBU8 12344
bpnet/layers.py sha256=RRJjN4ezuCu-p1Vld58e0SGN1PGrU-NYqg9Ir-yKTd8 8605
bpnet/logging.conf sha256=y4iRoSyg3y_X4SJAAXbh9KxVnVSn8syLTsAupTfwo64 884
bpnet/losses.py sha256=I9CLKsFUwBoaqYDXkR90EIxzQHUeMhf-WPkK7-ZLFN8 2656
bpnet/metrics.py sha256=6mLEest0E2nsn-uRLt9d4zJg03heUeKLBgCAY1VkaHc 19917
bpnet/models.py sha256=Plud4jKAnYFlM_xQDQT7GquOaNx1a-Q2mFTZcjdBwQM 9149
bpnet/preproc.py sha256=SRG1RZP-VmZIWi35F7ikdhRf-7hd1TA9o-bLQY-nhEI 7613
bpnet/samplers.py sha256=5IP4y4vIfsobU1Zs2vJQnWEbsTVrs73H2xAaJzmHAjQ 3978
bpnet/seqmodel.py sha256=pHl9c1DyHLgLuH7wOiijHa2sJU1sef4KsInoCa-MR0I 13687
bpnet/simulate.py sha256=XNbeOzTa8R9jJciMkBAoJYUu8qVoTrQm0olkupkzrbM 12004
bpnet/stats.py sha256=tZnQXe_t6w75oq-d0adk-jz3Z6VqucMfu7AzwMtxzjo 4290
bpnet/trainers.py sha256=OeSCuRB2EQDXTKrHxQzqa70mlL_31LWtCiuFYFXGO-k 8489
bpnet/utils.py sha256=ONz6H7jaEBLN3Xzn1u6qKHnGcSV8JpfN_rUsuX-LkAI 13633
bpnet/cli/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
bpnet/cli/contrib.py sha256=O8Vri9nhGrF_6LaWpuOzIXOXzUyZi_BX4PksRol0OI8 21313
bpnet/cli/export_bw.py sha256=FU-PTRexr1e-SFqHzXwrrMwPTfQ6F8FrFC-VlSE0IwA 5713
bpnet/cli/modisco.py sha256=h9k_K8iF1zTum2hfxjC_4Nc7mPsosDglTNshUcAex4k 38832
bpnet/cli/train.py sha256=FqsYZamJY1LfRrrb_XfAbM_nZsYEUk5DSoQVN-x-QFw 27853
bpnet/external/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
bpnet/external/deeplift/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
bpnet/external/deeplift/dinuc_shuffle.py sha256=56RTM1X4OaLr_h1S51rGTwU3vBIgNrUURKAHUNvfvDw 1146
bpnet/modisco/__init__.py sha256=wc3eZ36GLdhEieypZMHsl-PIeM3yHEuNnGd1cp32umI 105
bpnet/modisco/core.py sha256=bbTpdbCyx_SSSnrP3wI33-2nYoZ0girOkH1m8xrc4As 53696
bpnet/modisco/files.py sha256=YhXakxXHDKwOzs5jao8gXjAGxm1iQdhp_FPIt94BOKI 24110
bpnet/modisco/motif_clustering.py sha256=v7Q_40ez65K6aGO_NCHSR9LBy3P8_y3IuNwO9D2_OOU 20223
bpnet/modisco/pattern_instances.py sha256=odfLJTKmyfzUPadNsmZjuDZyeLHes9TtT7gYwtzUVeM 19255
bpnet/modisco/periodicity.py sha256=e4FOEysJ_hT6MFrG_WjYDZcnHC4sRRmxarB2OYXfygA 4265
bpnet/modisco/profile.py sha256=SdeOXCBba9AlC1nrdg3O24IZFj9u4Y4fodMfYG51G1E 2801
bpnet/modisco/sliding_similarities.py sha256=YdxQj2WTGVcce0Kogob3aggE2ihBHpiWxFflRGHgRO0 8750
bpnet/modisco/table.py sha256=_9qiE1iN1iNLab1WlNYvt4a7snLj0OrPYFjmbt5PjAY 16092
bpnet/modisco/utils.py sha256=Ac_VHekS8so30kxVByY3J4ZRGncj8J7sD-Hy4Y-gyr0 2180
bpnet/plot/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
bpnet/plot/evaluate.py sha256=IlvfQf0ey3EkAEy7-SEY7cU51kr3nvtnmdzw_TAHoGM 2268
bpnet/plot/heatmaps.py sha256=_Co8XkxxtxedMoY9PpswWR58YxH_zJI_Uyksf_hC-cA 7277
bpnet/plot/profiles.py sha256=mMGqnvPvVq7z68wMwg92H21JtEQg3E7RKBEl6CEdCw8 14199
bpnet/plot/tracks.py sha256=eQORrCjjTDEgsaKGDLSTs1B2p9mQeAh19myV1HEc8Co 10405
bpnet/plot/utils.py sha256=l-d5oe41RZsLXPwIBbzcsAUSAsadNP__CeI1j_XxyrA 5724
bpnet/plot/vdom.py sha256=nOLppNRBGUpgjLgfjCem2_32WPcTGvPwc3qhluWpNeY 18410
bpnet/premade/bpnet9-chipseq.gin sha256=CRkQgvjXxQfy8ISxFIOZn4H9SoubUMrRsGb1giPTAks 4184
bpnet/premade/bpnet9-ginspec.gin sha256=LQl63nc8rk9GwATrZxVUYRY2ir4Vx40j4oQ12bqbD0w 4177
bpnet/premade/bpnet9-pyspec.gin sha256=W8QGz-iQQ344E3ggXyWZw2yWKDcMHPFsO-hlBvwp_dc 3142
bpnet/premade/bpnet9.gin sha256=LQl63nc8rk9GwATrZxVUYRY2ir4Vx40j4oQ12bqbD0w 4177
bpnet/premade/modisco-50k.gin sha256=E4deUco2CwzQEFUFdwLmNAN_PypimrmmFpIOnpwB6dM 1749
bpnet/templates/evaluate.ipynb sha256=MWHqsL8wnEx68Yz5wDI1D2uWTl0Iu389WSeL1HyN-jk 90195
bpnet/templates/modisco-chip.ipynb sha256=PA9w5Yk1PAnPYYA_sWNqE13cxBQISHAjVw_lIFDTE-o 1496914
bpnet/templates/modisco.ipynb sha256=hzHbP9GJl31GXN7xE10GzzB57ejVBFoiJyu98enoZpo 2372249
tests/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
tests/configurables.py sha256=NX7_4u7ZJUKPu3Bb_bvj3tjMFutdmyAvu8dfXaf_N60 868
tests/conftest.py sha256=H_-zT3tdpp8GfWc7Lw9Zb1ygUVpsTCaf0u3JCCVGatg 4594
tests/test_contrib.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
tests/test_gin_parse.py sha256=f98dMjLqFBgOYnuWa6X65QjD0OYo2YRooJq_MWBp37U 1346
tests/test_seqmodel.py sha256=wSwQMrl4WznA_K-p36kAjxuCnaBSTtL1Rs8yhx4Yq7g 3096
tests/test_train.py sha256=pEJm-cOJdmEm47CRjTq0WGC4ZnDrQtU8ijC6KLNCPyM 1451
tests/cli/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
tests/cli/test_contrib.py sha256=izNs4j6tkk-OPYNFPbHIqHexOOyTWvYx8N0fX9Gr59o 2711
tests/cli/test_export_bw.py sha256=mSQVwBFFsw9ztIMSWl7LQUGwLqWpPXG8Nzwe-oia--0 1141
tests/cli/test_modisco.py sha256=KK0LcWz3HsKOq73vT_5hzl9jcjwhF6xglCtLQ65O6CA 2803
tests/cli/test_train.py sha256=hM6bikOA9HTY4JJBkFRj_A4ypBr1HZkcvvSPdT4QJCc 3383
tests/modisco/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
tests/modisco/test_core.py sha256=A2hBU1B94_I5hycmr3--tubv_JkS32GpiX2pgBjifNk 531
tests/modisco/test_modisco_file.py sha256=ETq6bdZVLTedkdnMi0pCyFBA_EafJ2DYkbtlJhNBgx8 1323
tests/modisco/test_pattern_instances.py sha256=ycvv_VqmAdpd1jP6sh9A8hZffmJMN0G4lQMsTp_f1e0 2283
tests/plot/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
tests/plot/test_tracks.py sha256=OpU5WCf8W2ASMwV6GuWc1LukjsJKAihEbsXyY8qYIZI 143
bpnet-0.0.23.dist-info/LICENSE sha256=v8sojvEPKfDbyrKKjtO0RzZVBsxU_g7F7HKun7qAi7E 1067
bpnet-0.0.23.dist-info/METADATA sha256=SnULQdL5pvut4RVcvWPzOKnDOZS8omFO9mp-Rn_gLpk 1761
bpnet-0.0.23.dist-info/WHEEL sha256=U88EhGIw8Sj2_phqajeu_EAi3RAo8-C6zV3REsWbWbs 92
bpnet-0.0.23.dist-info/entry_points.txt sha256=1Y9C3BTPtcMkzGYgbjYbN1drwwBm4-c9l93oKdhmLFo 47
bpnet-0.0.23.dist-info/top_level.txt sha256=DPlSg8x8E3atWNYqUkPFCwNrWYo_Q9NVPMltKTjANhY 12
bpnet-0.0.23.dist-info/RECORD — —

top_level.txt

bpnet
tests

entry_points.txt

[console_scripts]
bpnet = bpnet.__main__:main