chado-tools

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0.2.14 chado_tools-0.2.14-py3-none-any.whl

Wheel Details

Project: chado-tools
Version: 0.2.14
Filename: chado_tools-0.2.14-py3-none-any.whl
Download: [link]
Size: 157875
MD5: 520766351d31ff2d55b7042224586d3b
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Uploaded: 2019-08-23 09:29:30 +0000

dist-info

METADATA

Metadata-Version: 2.1
Name: chado-tools
Version: 0.2.14
Summary: Tools to access CHADO databases
Author: Christoph Puethe
Author-Email: path-help[at]sanger.ac.uk
Home-Page: https://github.com/sanger-pathogens/chado-tools/
License: GPLv3
Classifier: Programming Language :: Python :: 3 :: Only
Classifier: License :: OSI Approved :: GNU General Public License v3 (GPLv3)
Classifier: Operating System :: OS Independent
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: Development Status :: 3 - Alpha
Requires-Dist: sqlalchemy (>=1.3.3)
Requires-Dist: sqlalchemy-utils (>=0.34.0)
Requires-Dist: psycopg2 (>=2.7.6)
Requires-Dist: pyyaml (>=5.1)
Requires-Dist: pronto (>=0.11.0)
Requires-Dist: gffutils (>=0.9)
Requires-Dist: biopython (>=1.73)
Description-Content-Type: text/markdown
[Description omitted; length: 7424 characters]

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top_level.txt

pychado

entry_points.txt

chado = pychado.chado_tools:main