CloudHummingbird

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1.1.0 CloudHummingbird-1.1.0-py3-none-any.whl

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Project: CloudHummingbird
Version: 1.1.0
Filename: CloudHummingbird-1.1.0-py3-none-any.whl
Download: [link]
Size: 64400
MD5: 81ee9121d466a43ddc9b7f86994402a9
SHA256: 4ad20e69a7d6d4f4845385bca0b5273c0893cf7e78e593b7be6c5ff4aa9cfc93
Uploaded: 2021-09-18 19:56:31 +0000

dist-info

METADATA

Metadata-Version: 2.1
Name: CloudHummingbird
Version: 1.1.0
Summary: A tool that recommends the best way to run your genomics pipelines on the cloud
Author: Stanford Center For Genomics And Personalized Medicine
Author-Email: abahman[at]stanford.edu
Home-Page: https://github.com/StanfordBioinformatics/Hummingbird
Project-Url: Bug Reports, https://github.com/StanfordBioinformatics/Hummingbird/issues
Project-Url: Source, https://github.com/StanfordBioinformatics/Hummingbird
Classifier: Intended Audience :: Science/Research
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: License :: OSI Approved :: Apache Software License
Classifier: Programming Language :: Python :: 3.6
Classifier: Programming Language :: Python :: 3.7
Classifier: Programming Language :: Python :: 3.8
Requires-Python: >=3.6, <4
Requires-Dist: dsub (==0.3.6)
Requires-Dist: future (==0.18.2)
Requires-Dist: configparser (==5.0.0)
Requires-Dist: scipy (==1.5.2)
Requires-Dist: numpy (==1.19.1)
Requires-Dist: matplotlib (==3.3.0)
Requires-Dist: scikit-learn (==0.23.2)
Requires-Dist: google-cloud-storage (==1.30.0)
Requires-Dist: boto3 (==1.18.6)
Requires-Dist: azure-storage-blob (==12.6.0)
Requires-Dist: azure-identity (==1.5.0)
Requires-Dist: azure-batch (==10.0.0)
Requires-Dist: azure-mgmt-compute (==18.0.0)
Requires-Dist: retry (==0.9.2)
Requires-Dist: mock; extra == "tests"
Provides-Extra: tests
Description-Content-Type: text/markdown
License-File: LICENSE.txt
[Description omitted; length: 4432 characters]

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top_level.txt

Hummingbird

entry_points.txt

hummingbird = Hummingbird.hummingbird:main