cobra

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0.29.0 cobra-0.29.0-py2.py3-none-any.whl

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Project: cobra
Version: 0.29.0
Filename: cobra-0.29.0-py2.py3-none-any.whl
Download: [link]
Size: 1192063
MD5: 5967796db97414c138ca7183dc1b9ae8
SHA256: 9a9bc4ed1a027c22c5fd4fed111cce7606cda3cdfc44587483c35714ba4dd9f0
Uploaded: 2023-10-31 18:34:42 +0000

dist-info

METADATA

Metadata-Version: 2.1
Name: cobra
Version: 0.29.0
Summary: COBRApy is a package for constraint-based modeling of metabolic networks.
Author: The cobrapy core development team.
Author-Email: cobra-pie[at]googlegroups.com
Maintainer: Moritz E. Beber
Maintainer-Email: moritz.beber[at]gmail.com
Home-Page: https://opencobra.github.io/cobrapy
Download-Url: https://pypi.org/project/cobra
Project-Url: Source Code, https://github.com/opencobra/cobrapy
Project-Url: Documentation, https://cobrapy.readthedocs.io
Project-Url: Bug Tracker, https://github.com/opencobra/cobrapy/issues
License: LGPL-2.0-or-later OR GPL-2.0-or-later
Keywords: metabolism,biology,constraint-based,linear programming,mixed-integer,optimization,flux-balance analysis,reconstruction
Classifier: Development Status :: 5 - Production/Stable
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: GNU General Public License v2 or later (GPLv2+)
Classifier: License :: OSI Approved :: GNU Lesser General Public License v2 or later (LGPLv2+)
Classifier: Natural Language :: English
Classifier: Operating System :: OS Independent
Classifier: Programming Language :: Python :: 3.8
Classifier: Programming Language :: Python :: 3.9
Classifier: Programming Language :: Python :: 3.10
Classifier: Programming Language :: Python :: 3.11
Classifier: Programming Language :: Python :: Implementation :: CPython
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
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Requires-Dist: bumpversion; extra == "development"
Requires-Dist: isort; extra == "development"
Requires-Dist: tox; extra == "development"
Provides-Extra: array
Provides-Extra: development
Description-Content-Type: text/x-rst
License-File: LICENSE
[Description omitted; length: 7100 characters]

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