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0.3.1 depp-0.3.1-py3-none-any.whl

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Project: depp
Version: 0.3.1
Filename: depp-0.3.1-py3-none-any.whl
Download: [link]
Size: 49750
MD5: 4ad87a635499d0359e0fa409f2bc06b0
SHA256: c45d000528ca985606bd281c1e1d7c500d1fe2c10b8087a9f46486220e661719
Uploaded: 2023-04-27 23:36:08 +0000

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METADATA · WHEEL · RECORD · top_level.txt

METADATA

Metadata-Version: 2.1
Name: depp
Version: 0.3.1
Summary: DEPP: Deep Learning Enables Extending Species Trees using Single Genes
Author: Yueyu Jiang
Author-Email: y5jiang[at]ucsd.edu
Home-Page: https://github.com/yueyujiang/DEPP
Requires-Dist: numpy (==1.22.3)
Requires-Dist: treeswift (==1.1.19)
Requires-Dist: torch (==1.11.0)
Requires-Dist: pandas (==1.4.2)
Requires-Dist: pytorch-lightning (==1.5.4)
Requires-Dist: biopython (==1.79)
Requires-Dist: omegaconf (==2.1.0)
Requires-Dist: apples
Requires-Dist: scipy (==1.7.3)
Requires-Dist: dendropy (==4.5.2)
Description-Content-Type: text/plain
[Description omitted; length: 161 characters]

WHEEL

Wheel-Version: 1.0
Generator: bdist_wheel (0.36.1)
Root-Is-Purelib: true
Tag: py3-none-any

RECORD

Path Digest Size
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depp/Agg_model_recon.py sha256=MARLANfB5Cs4-i4nn0NEU5xpdYaIpp7O_eFFqOLv8xA 4909
depp/Model_pl.py sha256=1r-lasVoJXx7ERQ6yN8VF79cETOYa56mtJaJ2h9fQcw 8710
depp/Model_recon.py sha256=9MuM12I44agowx-RclPo0OjVrRbYteu2nHE21BaIEKk 11301
depp/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
depp/assign_cluster_by_placement.py sha256=RV1VJvvPqKQI8H3_a_CzDSlJJXQ6qz-cGKvLzORhup0 1605
depp/count_gapped_ratio.py sha256=kIjguUU03knFFOnIkeuaOSoa8P_afuf4UcX8rUlzObY 526
depp/data.py sha256=h_wZ0iK2JkMnREA_mBLPwIDBzofY_x0dmvFGoU5VdzM 12673
depp/data.split.py sha256=bZpdU-quMEJkj79zdmArtMfiwmzwmndUbZ8dLPLwy0w 2431
depp/data_recon.py sha256=QS1uo6w_cyOgXYKRl4YREbx2KU7O1vYlRE6-Pd7GkVo 4009
depp/default_config.py sha256=j3LkooO-13Ervs6NHo3Gj1U16MQZ1URSojUGQP8z4yw 1730
depp/depp_distance.py sha256=mV47kOeNvFhtVjkWnjymxigsMvepMAxeScl0V4hKKeg 2433
depp/depp_distance_recon.py sha256=dEf_-GpVMPdCH1_p2t_d6pIi79H-Ur86hqrzlgO56oY 2063
depp/filter_by_entropy_gap.sh sha256=XiI9lmohczQLg14MrPz0kk3gOef4Iz5VzV-GtEO0nVU 766
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depp/get_tree_dist.py sha256=vuEIhAqX5ueTsJDwhmSLNFswZmtY4SjNRGbW0nVmYPI 873
depp/grep_jplace.py sha256=xZMcJJZj5ToENX2IYXTq6vuQhDqiO7Qqm432dK5ov2E 576
depp/grep_seq.py sha256=cP2A_viJYj_GIl11SEDB4pXXbo5ayyhgzAZOUCDVXJI 1008
depp/grep_seq_group.py sha256=ahlm0qOJelLCZKFtLALb-RBi88-iPJ6ymuoHKGisUBU 909
depp/select_placement.py sha256=VT2Zs-Z5UnyjtJYZxqFYHlhr9MkGUW0f6MLSsFKiFek 743
depp/select_species_by_distance.py sha256=q09dYVZLr-xhv9UldjHv30F4G8OE3anbnJF6ApYUOiI 895
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depp-0.3.1.dist-info/RECORD — —

top_level.txt

depp