Path |
Digest |
Size |
funpipe/__init__.py |
sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU
|
0 |
funpipe/bam.py |
sha256=H7blSXu5feMiC2rcFbxfmqtoFlry3QLrx-tTCiGWxG0
|
3235 |
funpipe/fasta.py |
sha256=taep7cowElZg1PHWzDLjDN4Mmqo-HgxyUpoUfPWNUUw
|
1045 |
funpipe/gatk.py |
sha256=y4L-rn5CKgAlj26-hQLieXHUhb-HkxV_Wh9-HtoG_yo
|
3423 |
funpipe/microbiome.py |
sha256=8AScnRcdHGMwC0xhp9klhRbBGqKUXNDW4tTtwoLeE4U
|
273 |
funpipe/phylo.py |
sha256=a0WoXktTSrHvyf1rqfHfS9IoJ5t_zalz0YdQeMHqPZ4
|
2260 |
funpipe/picard.py |
sha256=nrz2DZzxY4IERxeuyb2IFPRnsuPVzcOu6CeKfgbt68o
|
914 |
funpipe/sv.py |
sha256=0C2enQM-R2HwkogwlIaeRpz9K8_F8TKdfRYbeAKzAXg
|
446 |
funpipe/utils.py |
sha256=JsQEHr4lO4XOD_C43ng-m5pAsS8fty3wEQfEzEsv8gs
|
940 |
funpipe/vcf.py |
sha256=QuBN-uWmBAYUSSUSI9eByZHSHjsmQW5O7Z-kN2tEKpk
|
16629 |
funpipe/vcftools.py |
sha256=TvsNOAWXiMtPb4CZi3PxjGYjF-Xn6-lLtzPKUgbD59o
|
14553 |
funpipe/scripts/bam_qc_metr.py |
sha256=i-EQwEUEpesFd75BLJ2jeqH1_ws4Ol3p-DZXgAb04TM
|
4348 |
funpipe/scripts/coverage_analysis.py |
sha256=gVwCVjkPYpUyB2mjp1Aq6ae3Lp8j6nhS750uJ_enHAc
|
16991 |
funpipe/scripts/coverage_barplot.R |
sha256=CCY-2BbqfaoLub-7iSKWGrdhTLkBvqXUF4pjYonMzkM
|
6719 |
funpipe/scripts/dep_per_win.pl |
sha256=GgDbyOXWIXFgQE12yrnWotB-Kqyvh6MQtIxvJHHDDcY
|
5220 |
funpipe/scripts/fastqc.py |
sha256=_MZ4wPVsJDcNB48O72S58znSJm6ONkoaYvEvPPl8M6c
|
1219 |
funpipe/scripts/filter_gatk_genotypes.py |
sha256=7oQfBfE6ifnmWQEsyKQyp1M1TyhvzfvOV3woekHS7-8
|
6345 |
funpipe/scripts/genot_concord.py |
sha256=IvT72TOeb4nPNu-fDCf3ylwrIywsQ3Gznk3ebq60tY0
|
1005 |
funpipe/scripts/get_ref_path.py |
sha256=M69dmYOUKw7rbak6V6BL69j-AbKk0MqZ5CSHmWOMoYQ
|
842 |
funpipe/scripts/patch_ref_contigs.py |
sha256=e8Yn78Jpz3TOo6TtIDlG9MHTESWQZEiZZKvoz-YqvHI
|
4680 |
funpipe/scripts/pct_reads_per_species.py |
sha256=AkpycWN0WnK38yxIbhfI4LZR2faVM6AuLfEPBlu1Trs
|
3738 |
funpipe/scripts/phylo_analysis.py |
sha256=B0g0Y-DDRhgfAYw8sepJLzUha6fKJqTq_aAwearo3wY
|
1611 |
funpipe/scripts/pilon_metrics |
sha256=TfzUVwgtbrsgPUtXx2t7WHQnapjPw2814JWJfqqJocU
|
5182 |
funpipe/scripts/qc_metr_plot.R |
sha256=Ts2x07c9RaOkG2GYqKvf_J1mKyBaQkurQrf2bg2hG_8
|
661 |
funpipe/scripts/run_pilon.py |
sha256=SzGZ9yi2pW0U7ErZYseNJfNFjXug5uef1qmO4LWMlAo
|
1858 |
funpipe/scripts/run_ploidy.py |
sha256=pFM4Ho0Ts9lsTiYXv7YGJU0NELrEMbCmzUSTNL44PZA
|
2500 |
funpipe/scripts/run_snpeff.py |
sha256=OVg1HWP9RKsnIdNmmeAfet0u5k6LE-u7MhYppBV5bGk
|
1507 |
funpipe/scripts/snpeff_db.sh |
sha256=33P8PxKWdIZgRSP0nEzZfwhd07kScd8W9dXu-v2ZFAg
|
1600 |
funpipe/scripts/vcf_qc_metr.py |
sha256=nuZuujJ1f8Ov3CbeDhos1kKflJDOGENlZ72fprlwx9k
|
3121 |
funpipe/scripts/vcf_snp_to_fasta.py |
sha256=X4a6xPJSupfOctCv36vjcjtt4uW1m65nlDJHv9UFdLU
|
6158 |
funpipe-0.1.0.data/scripts/bam_qc_metr.py |
sha256=MU3xtqzlAzm2pikq4klXQ9ohHpS8tKqxWYYWjMQoCo0
|
4334 |
funpipe-0.1.0.data/scripts/coverage_analysis.py |
sha256=Ec40QX0fLuCWd6pXMLI4SpwBzBqREP-kyY4EPyNzBNg
|
16977 |
funpipe-0.1.0.data/scripts/coverage_barplot.R |
sha256=CCY-2BbqfaoLub-7iSKWGrdhTLkBvqXUF4pjYonMzkM
|
6719 |
funpipe-0.1.0.data/scripts/dep_per_win.pl |
sha256=GgDbyOXWIXFgQE12yrnWotB-Kqyvh6MQtIxvJHHDDcY
|
5220 |
funpipe-0.1.0.data/scripts/fastqc.py |
sha256=sG_A-aRoWXeP_kjNIIsfS4E1lusdzwzeti9J4iM9lgs
|
1205 |
funpipe-0.1.0.data/scripts/filter_gatk_genotypes.py |
sha256=uzKf9l1Vs8loOhWiCSAW6YLKz-0HDhl7VwEYon4N4iw
|
6331 |
funpipe-0.1.0.data/scripts/genot_concord.py |
sha256=qeUbERMda0UOhPfGzxcWrYeqi5ZgdoaCl7n8pWCjP-I
|
991 |
funpipe-0.1.0.data/scripts/get_ref_path.py |
sha256=M69dmYOUKw7rbak6V6BL69j-AbKk0MqZ5CSHmWOMoYQ
|
842 |
funpipe-0.1.0.data/scripts/patch_ref_contigs.py |
sha256=zKT9-J0FTXdl7AXw0GOoOnA_0wTjs8yaGabSBxr_CC0
|
4666 |
funpipe-0.1.0.data/scripts/pct_reads_per_species.py |
sha256=7TMnz2d4TKCbvVOTS9OkyOz7mKC2jOUqrWVr7gqnsD0
|
3724 |
funpipe-0.1.0.data/scripts/phylo_analysis.py |
sha256=FsVFXUYO_ISWnE8vfHIa7qp9-TYih4ZWiSedCoKOfBo
|
1597 |
funpipe-0.1.0.data/scripts/pilon_metrics |
sha256=KhgP8HgC1ir00CgdV9Q6Pzk5KNX2hBZlyII3SdX_YXo
|
5173 |
funpipe-0.1.0.data/scripts/qc_metr_plot.R |
sha256=Ts2x07c9RaOkG2GYqKvf_J1mKyBaQkurQrf2bg2hG_8
|
661 |
funpipe-0.1.0.data/scripts/run_pilon.py |
sha256=nz2fxeGfVED6c1eY0mX75iSmnEI4TwEnlo0p5IzqCxQ
|
1845 |
funpipe-0.1.0.data/scripts/run_ploidy.py |
sha256=SiSa_TyoYvS0RrttQ2in4ob-TGBjG-M_90tbO-hWQiA
|
2486 |
funpipe-0.1.0.data/scripts/run_snpeff.py |
sha256=qtHa8Jh3d2AkpnKszgOz7LSJOy__ZGyj4ufD1tPjPNQ
|
1493 |
funpipe-0.1.0.data/scripts/snpeff_db.sh |
sha256=33P8PxKWdIZgRSP0nEzZfwhd07kScd8W9dXu-v2ZFAg
|
1600 |
funpipe-0.1.0.data/scripts/vcf_qc_metr.py |
sha256=VRoFrYtNS2cAFGDDNGGjS13L_z-eg09JaobvhLgFZ2g
|
3108 |
funpipe-0.1.0.data/scripts/vcf_snp_to_fasta.py |
sha256=jF4UgNaktRroR1tksgq1LaRh8OP8iirob_Ur-ibQdcs
|
6144 |
funpipe-0.1.0.dist-info/LICENSE |
sha256=4sXpkWFXc0RheZ5J9cwenQ9rGE2b9z_pjDHQMTZqQD8
|
1070 |
funpipe-0.1.0.dist-info/METADATA |
sha256=4UVFro19VWXBciLHVqOIZ2iY2Qddo_DHzsuY4NbIdW4
|
5989 |
funpipe-0.1.0.dist-info/WHEEL |
sha256=U88EhGIw8Sj2_phqajeu_EAi3RAo8-C6zV3REsWbWbs
|
92 |
funpipe-0.1.0.dist-info/top_level.txt |
sha256=nkfKCTwQLmEtouSlU_1AJoy9IIviQRe2mOmsnFllEoA
|
8 |
funpipe-0.1.0.dist-info/RECORD |
— |
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