Path |
Digest |
Size |
homi_pipeline/HoMi.py |
sha256=xZPdYn5QhqGG2yF9UN1npPdysXX1aJee-GagYmL_Nc8
|
4439 |
homi_pipeline/HoMi_cleanup.py |
sha256=YkqsZAYmSl38EuNBIVYAWoKx7FZgNi3O_WAoFn9nfBs
|
2055 |
homi_pipeline/__init__.py |
sha256=AbpHGcgLb-kRsJGnwFEktk7uzpZOCcBY74-YBdrKVGs
|
1 |
homi_pipeline/check_config.py |
sha256=PE_Fb5fCGqdDaTtBNRz9vFTnGYeG03gvKRS5KEfh_Vw
|
5427 |
homi_pipeline/profile_setup.py |
sha256=IFfJ4tI7cSpwmtXeNo86OI1uMyiQCMhIz95ltKb0tK8
|
5418 |
homi_pipeline/snake_utils.py |
sha256=JsCS76uNaxDFPWgrLOe1iFVNCP5_NbxdbZJqNlScq-k
|
6784 |
homi_pipeline/snakefile |
sha256=YMfp4_2vjNfbBhVL4_XerKaes9WRCELEE2B1HtYWyJA
|
52090 |
homi_pipeline/conda_envs/bbmap.yaml |
sha256=cvP_L9LBTfmALvP8ah179_gSHhHPCYiMXTuPYEcX0pM
|
101 |
homi_pipeline/conda_envs/fastqc.yaml |
sha256=oXRm6swUX_fN6dk4oq83khsrbLAE7bxOBE1dku7ltaA
|
102 |
homi_pipeline/conda_envs/featureCounts.yaml |
sha256=gEb0eolxHfmnj4-yvaJotlhS9CBS5O6idFxKu-HKYGA
|
111 |
homi_pipeline/conda_envs/hisat2.yaml |
sha256=fH3FMWeqAusfpZVIqTMi5nsbg55T3HmUytUeiXrSBj8
|
122 |
homi_pipeline/conda_envs/hostile.yaml |
sha256=tzqMWzhaX2e6Ek9pM8ry9jrA56-cM4Q_D0Shys_VD_s
|
92 |
homi_pipeline/conda_envs/humann.yaml |
sha256=5Cchqo8jj1yZ-T__BUsiv0zbNRA0kT9OGa906C3D4bY
|
187 |
homi_pipeline/conda_envs/kraken.yaml |
sha256=sPF2dhpZWrXygPyqyJHJ1tfmI1nzungGIE-U_3gxh_0
|
136 |
homi_pipeline/conda_envs/nonpareil.yaml |
sha256=2LjcfvkMZN24eKK3DsbkNNswU5tPP1_hKDLCtK3E_dE
|
110 |
homi_pipeline/conda_envs/r_env.yaml |
sha256=R9OnfW-1kDhkxwduZC2VvSYeSYgsnxKHXtv5mJlDC8U
|
239 |
homi_pipeline/conda_envs/seqtk.yaml |
sha256=B7gbgwHwawB9CECAdMNkBPTtwXlP1z6vxOR3uY1cI0I
|
101 |
homi_pipeline/conda_envs/trimmomatic.yaml |
sha256=rW1bwicsrQCwwOOEHfDvigfSFgsO-QjSOg9fgpBYQys
|
100 |
homi_pipeline/data/adapters.fa |
sha256=4GqwDd0PZ_oXwkuzu2MKiEmFl-mrp_5auWFsiCSjVbk
|
13953 |
homi_pipeline/rule_utils/Gut_metabolic_modules.Rmd |
sha256=uLYdgf7_RyI5y-BpIu3nk9Eh4BkkAzn6Mq2w2gQYvLo
|
3722 |
homi_pipeline/rule_utils/HUMAnN_microshades.Rmd |
sha256=JovarSFXRLGAarxiCCebjo-ge8HCyyFzOpGeAYRHuac
|
5306 |
homi_pipeline/rule_utils/HUMAnN_to_phyloseq_helper.R |
sha256=fZMnWT3N7pskFW7Gn-bnQBNHaD2UZvgxMx9BVDqOIWo
|
3076 |
homi_pipeline/rule_utils/Kraken_microshades.Rmd |
sha256=i8bRN7mf8dq5AyJxfYESbmxFSt_-47hx8NfwrYEced8
|
11188 |
homi_pipeline/rule_utils/Metaphlan_microshades.Rmd |
sha256=SvmePlPKv0512trw-G_YQrTjbJfMnTjHJgOulPaNvec
|
10015 |
homi_pipeline/rule_utils/R_packages.R |
sha256=J5kr3G4gH-DFu7intEzTTPai4Uvr5GYodLXFFCTsqPA
|
988 |
homi_pipeline/rule_utils/aggregate_metaphlan_bugslists.py |
sha256=cfa01Hl_42RAz6caB3dqJxFxGy9l_hOA268PrCJoaZE
|
2694 |
homi_pipeline/rule_utils/bracken_to_phyloseq_helper.R |
sha256=XTnrH8ZFlCoSpqlIv7Fvcs5oElw3OZXSNG11E0WCHHU
|
965 |
homi_pipeline/rule_utils/combine_kreports.py |
sha256=7EEzXYTzo_Ffyf5Zifs8hn3z5u7AH5myZVnNts5rXRw
|
13532 |
homi_pipeline/rule_utils/convert_mphlan_v4_to_v3.py |
sha256=PME7u0guUm5LmYJ5_OCah11vzbzt_n3KNe5mDnJz014
|
1809 |
homi_pipeline/rule_utils/counts_to_tpm.py |
sha256=W8dy8F0ibgn1tLw1_C3HmdE5KT0fE4RO2uIICo5ImH8
|
2908 |
homi_pipeline/rule_utils/metaphlan_to_phyloseq_helper.R |
sha256=sPdY-WeH_TMz25-QsZGKChW2kDtLu-bRoqshuiNawY8
|
1313 |
homi_pipeline/rule_utils/nonpareil_curves.Rmd |
sha256=P4ik34I8vk_EeGdgXQm5APO61zoS29sv-VfaCccJfAw
|
1550 |
homi_pipeline/rule_utils/read_reports.py |
sha256=YR9oRZ6cJk-P2ZTyLMkb_f3TEcO14vVvttJgun_yjgU
|
4586 |
homi_pipeline/rule_utils/sam2bam.sh |
sha256=jwt_cz3KI909bmPpfgYmSjyWcILIEpjgqGePTeEg2t4
|
847 |
homi_pipeline-1.0.12.data/scripts/HoMi.py |
sha256=OB-d8vVteERx791FsF6FOvym5PT4r6LJ3eNY7T_yweA
|
4425 |
homi_pipeline-1.0.12.data/scripts/HoMi_cleanup.py |
sha256=ORzeQjJw7NG7YA-TUQkbLJLKP84ehP0gVfG-BDhJyB0
|
2041 |
homi_pipeline-1.0.12.data/scripts/aggregate_metaphlan_bugslists.py |
sha256=k_EWIThmaTWIbCHSILRvwZWxJCvxKpsGln8gkMzXyPQ
|
2680 |
homi_pipeline-1.0.12.data/scripts/check_config.py |
sha256=heOrmo7T-WnId35vg5M3d5i2NBP9TGeicU3e697btYg
|
5413 |
homi_pipeline-1.0.12.data/scripts/combine_kreports.py |
sha256=Lsi8zPPZ5oHNLFXXivNmc7oiyOnz7tLKGEt1QFTtHa8
|
13518 |
homi_pipeline-1.0.12.data/scripts/convert_mphlan_v4_to_v3.py |
sha256=zdqfbn3-oun1y4N3j2hIinLTfhQ2JPbWADS3WBtUwrg
|
1795 |
homi_pipeline-1.0.12.data/scripts/counts_to_tpm.py |
sha256=OG5TlHd685-FKIC0ncqcCD7pe3QMHe_CrjxKf93NZCw
|
2894 |
homi_pipeline-1.0.12.data/scripts/profile_setup.py |
sha256=N3zsXYipwCl1m7eAD27cAhFBd0vJltEqNmKmBw3o4j0
|
5404 |
homi_pipeline-1.0.12.data/scripts/read_reports.py |
sha256=wq5oRt3PwH3mqttbGoOTX-0cmY8JwNz2Anjm032D8oE
|
4572 |
homi_pipeline-1.0.12.data/scripts/snake_utils.py |
sha256=JsCS76uNaxDFPWgrLOe1iFVNCP5_NbxdbZJqNlScq-k
|
6784 |
homi_pipeline-1.0.12.dist-info/LICENSE |
sha256=8-A_nDsueKwwUm6iSSX0Bn3CQFP2UMO6oGdLxzU-Auw
|
15249 |
homi_pipeline-1.0.12.dist-info/METADATA |
sha256=N3Nlmj9r5xgOVVpEW_URAbhxqidnapM77o1Nchi8jjE
|
7670 |
homi_pipeline-1.0.12.dist-info/WHEEL |
sha256=PZUExdf71Ui_so67QXpySuHtCi3-J3wvF4ORK6k_S8U
|
91 |
homi_pipeline-1.0.12.dist-info/top_level.txt |
sha256=i1JmKWh8jr7DXaCrvCszpK4yoOLsJBKjNbB2-gJkazg
|
14 |
homi_pipeline-1.0.12.dist-info/RECORD |
— |
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