Path |
Digest |
Size |
larcoh/__init__.py |
sha256=nSeowLt5yNyinEejPaY9Zk1VlBECRnx4u-sSQGWoXYU
|
713 |
larcoh/dataproc.py |
sha256=mxgsiDhdFcvgJI-bRW-mlXly0ghMtEf7dRoIl5P-FQ4
|
3685 |
larcoh/filetypes.py |
sha256=NJtNt8YZ8hSaMd6LF4VQA6NnFOGeVLr7HExckA5PI2U
|
7343 |
larcoh/main.py |
sha256=xPdrINNaJSqM2qUHg4dLKkcW0cQfLBPP6nkkygoS8oQ
|
19957 |
larcoh/pipeline.py |
sha256=AJ1FtvGgQVt0EBvW17I4IWjjA2eWQobUpKkYukRNbRs
|
4625 |
larcoh/pipeline_utils.py |
sha256=aSkICr-B8sIwAQu5qQ59ntSW39WXEp1n0cyGx46djn0
|
2622 |
larcoh/query_utils.py |
sha256=dhP4rJ0au4xYMaVhKhXnfZI5kzIPIvNqg-w9U9GoQwE
|
6474 |
larcoh/targets.py |
sha256=4zwRwNTs-ulvJPzqAGvV5RLpGc7OHx6JoKgVTVHKNFg
|
19181 |
larcoh/types.py |
sha256=8_qK67RERg-q8Iv3XZPixPa9EG9AV0gfuRinE-dttVE
|
7395 |
larcoh/utils.py |
sha256=J1vGnQfD64-WjaLJxNy3eF-3df4EgrFp5KZS93T7orY
|
7730 |
larcoh/version.py |
sha256=ls1camlIoMxEZz9gSkZ1OJo-MXqHWwKPtdPbZJmwp7E
|
22 |
larcoh-0.1.5.data/scripts/ancestry_pca.py |
sha256=BvBDShb46ocWpAhuy7Wt7X7Ds2tYcUanahuQ0WBl1i8
|
4381 |
larcoh-0.1.5.data/scripts/ancestry_plot.py |
sha256=sw9o7dqjbRpqjKgWaXhwwgD-4NXXJepzrLVsNvZCvNM
|
11633 |
larcoh-0.1.5.data/scripts/annotate_as.py |
sha256=NXAu7b4BLShbxNh7KuW_O21mbhulCcWiBfQ5Gd3cA2E
|
4911 |
larcoh-0.1.5.data/scripts/check_pedigree.py |
sha256=yv7Olu57Kg-9pbJGWr-GdkFuPeYDYxFsJ9nbe_VYu8w
|
8570 |
larcoh-0.1.5.data/scripts/combine_gvcfs.py |
sha256=fsSoakcp5r8EO-wFFEyJHpO3YbHCa_OSjvqIMTrdk7Q
|
2734 |
larcoh-0.1.5.data/scripts/create_rf_annotations.py |
sha256=AlseQwnyxioxY608E96aHsRPP9Ssw1_EKPpOFhI5wsk
|
6754 |
larcoh-0.1.5.data/scripts/evaluation.py |
sha256=9qKOD7dHzFxgrjeu43bK0hNtIHUXaVPWq05HmCdieKY
|
16270 |
larcoh-0.1.5.data/scripts/final_filter.py |
sha256=uE0TtKtAlL2xTtkzDoaI2Kmho_Llj0H10H9Ydq5fc4I
|
16478 |
larcoh-0.1.5.data/scripts/final_mt_to_vcf.py |
sha256=rNtocW2Dc4NLYrrIiWsjXVZIQRRIv5jQfIkMEhHsuJQ
|
2662 |
larcoh-0.1.5.data/scripts/generate_freq_data.py |
sha256=6HM2VW41xOEY8GLQSJp_UwKr7p1FpmgSRiNDL4VNKnE
|
10226 |
larcoh-0.1.5.data/scripts/generate_info_ht.py |
sha256=eacpX_UvkkZope_h2YPxRuiWR6lpWGnk56kd9bwoGng
|
6268 |
larcoh-0.1.5.data/scripts/generate_variant_qc_annotations.py |
sha256=EQ-X3RHRdj2ussmsmZWwdll2_LvvMjGoxOmR4h4bVOc
|
11771 |
larcoh-0.1.5.data/scripts/load_vqsr.py |
sha256=w7NZPqNRtfcULyC6VNo5HyGcU2ClSNk2TQ_m3xdW-Rk
|
3375 |
larcoh-0.1.5.data/scripts/make_finalised_mt.py |
sha256=kMDLxwi3AQkx9eDJz3CD4p6JhJRHy2egv4xKkUAMlac
|
5382 |
larcoh-0.1.5.data/scripts/make_noref_mt.py |
sha256=3FujRLzmaeFWaf8JBfuNUYVKojMhgERN8ktkJ1dOR8c
|
2201 |
larcoh-0.1.5.data/scripts/make_subset_mt.py |
sha256=RHO2KR8iXIxcbgLgjANfgu-xOBlOEFSPFLl2mDsQjco
|
2852 |
larcoh-0.1.5.data/scripts/random_forest.py |
sha256=cdfLLIKqZ0DeMsHUhLqjwmtsLp78Un-SLhOimRrD3XM
|
13360 |
larcoh-0.1.5.data/scripts/release_vcf_export_chrom.py |
sha256=5Weo9sCMzogCWL1LSQxFHjYewBTwUnOYVtQ0uQa-tAo
|
1951 |
larcoh-0.1.5.data/scripts/sample_qc_flag_related.py |
sha256=XCvcnWDcv5hvd58Tmap4NWXFF-IrZ5lYkvzhiJ2PNsQ
|
2462 |
larcoh-0.1.5.data/scripts/sample_qc_hard_filters.py |
sha256=73W2Z1zeeSStXWp9vQZBz38kmYlQpq9xYAKZ0Ke_Ct4
|
4653 |
larcoh-0.1.5.data/scripts/sample_qc_pcrelate.py |
sha256=7-XUpuUSdODmp1loF3lKY48Rcxa8G6U6_tnTgxyeEU8
|
3552 |
larcoh-0.1.5.data/scripts/sample_qc_regressed_filters.py |
sha256=IwTcg4ya_YV7VB8w0TiYn3Lj2zCHk0_D1svqDvEQkgc
|
2162 |
larcoh-0.1.5.data/scripts/sample_qc_somalier_to_ht.py |
sha256=vVRKvP0arInohOvF6G_EM_IbbaG34eYLVaJ-ToFfa8c
|
1692 |
larcoh-0.1.5.data/scripts/sample_qc_subset_mt_for_pca.py |
sha256=19b3I0w5vF5yi84xC2ZAhAlC69OU1bMTgd_M778xKqc
|
2316 |
larcoh-0.1.5.data/scripts/sample_qc_write_metadata.py |
sha256=wuad5zJQSZrpqeVrZgkKU5Qjmu9hdGl2mhy5d2CHYvM
|
9488 |
larcoh-0.1.5.data/scripts/siteonly_ht_to_vcf.py |
sha256=ju4qnkKjum8-LXXjgCtSqFLIUyEIiaPePgizsXTcnOY
|
1948 |
larcoh-0.1.5.data/scripts/variant_qc_plotting.py |
sha256=-CiHmpVDxUGYS6NVy9mSgLNn551Nci9igccT40r3LeE
|
29252 |
larcoh-0.1.5.dist-info/LICENSE |
sha256=_j76fb5CFKt53Dtm63dJhy9O-MDtf1DN2z5pChlbobw
|
1075 |
larcoh-0.1.5.dist-info/METADATA |
sha256=bmJPyLcYMs_Qu2LgCwPgsdB_MfUrMVKVDOUjrviajzY
|
10910 |
larcoh-0.1.5.dist-info/WHEEL |
sha256=G16H4A3IeoQmnOrYV4ueZGKSjhipXx8zc8nu9FGlvMA
|
92 |
larcoh-0.1.5.dist-info/top_level.txt |
sha256=5AlR8wuq5rInI3m3OwFDlqHHtRUNtwMZLKOpW2wAF_E
|
7 |
larcoh-0.1.5.dist-info/RECORD |
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