larcoh

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0.1.5 larcoh-0.1.5-py3-none-any.whl

Wheel Details

Project: larcoh
Version: 0.1.5
Filename: larcoh-0.1.5-py3-none-any.whl
Download: [link]
Size: 91869
MD5: 084721b7ae1f9a95b5f65881e2275880
SHA256: aebdb01d9eb9978bffb0598dbafd9c2a28a77ddc2f31f54d5b6a7d5082bc8842
Uploaded: 2022-08-16 00:00:45 +0000

dist-info

METADATA

Metadata-Version: 2.1
Name: larcoh
Version: 0.1.5
Summary: Pipeline for joint calling, sample and variant QC for WGS germline variant calling data in large cohorts
Home-Page: https://github.com/populationgenomics/joint-calling
License: MIT
Keywords: bioinformatics
Classifier: Environment :: Console
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: GNU General Public License v3 (GPLv3)
Classifier: Natural Language :: English
Classifier: Operating System :: MacOS :: MacOS X
Classifier: Operating System :: POSIX
Classifier: Operating System :: Unix
Classifier: Programming Language :: Python
Classifier: Topic :: Scientific/Engineering
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Requires-Dist: cpg-utils (>=4.4.5)
Requires-Dist: cpg-pipes
Requires-Dist: analysis-runner
Requires-Dist: sample-metadata
Requires-Dist: hail (>=0.2.97)
Requires-Dist: cpg-gnomad
Requires-Dist: pandas
Requires-Dist: click
Requires-Dist: google-cloud-storage
Requires-Dist: google-cloud-secret-manager
Requires-Dist: coloredlogs
Description-Content-Type: text/markdown
License-File: LICENSE
[Description omitted; length: 9776 characters]

WHEEL

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Tag: py3-none-any

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larcoh