meditability

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0.4.1 meditability-0.4.1-py3-none-any.whl

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Project: meditability
Version: 0.4.1
Filename: meditability-0.4.1-py3-none-any.whl
Download: [link]
Size: 179622
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Uploaded: 2025-02-07 10:05:11 +0000

dist-info

METADATA

Metadata-Version: 2.1
Name: meditability
Version: 0.4.1
Author: Daniel Bellieny, Taylor Hudson
Author-Email: bellieny[at]berkeley.edu, thudson[at]berkeley.edu
Classifier: Development Status :: 3 - Alpha
Classifier: Intended Audience :: Developers
Classifier: Topic :: Software Development :: Build Tools
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Requires-Dist: pandas (>=2.1.1)
Requires-Dist: numpy (>=1.23.5)
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Requires-Dist: biopython (>=1.81)
Requires-Dist: pyyaml (>=6.0)
Requires-Dist: importlib-resources (>=6.1.1)
Requires-Dist: pytz (>=2023.3)
Requires-Dist: boto3 (>=1.28.57)
Requires-Dist: requests (>=2.32.3)
Requires-Dist: alive-progress (>=3.1.5)
Requires-Dist: xmltodict (>=0.13.0)
Description-Content-Type: text/markdown
License-File: LICENSE
[Description omitted; length: 15763 characters]

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top_level.txt

prog
smk

entry_points.txt

medit = prog:main
ncbi_cross_db = prog:cross_db