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mgefinder

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1.0.6 mgefinder-1.0.6-py2.py3-none-any.whl

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Project: mgefinder
Version: 1.0.6
Filename: mgefinder-1.0.6-py2.py3-none-any.whl
Download: [link]
Size: 69894
MD5: 142ef84b46158f1a48e731f8e110652c
SHA256: fe882197e57bee9db2213a902a34d984729969b3c148ea77e566a6e0335e8a5b
Uploaded: 2020-10-19 18:35:20 +0000

dist-info

METADATA · WHEEL · RECORD · top_level.txt · entry_points.txt

METADATA

Metadata-Version: 2.1
Name: mgefinder
Version: 1.0.6
Summary: A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.
Author: Matt Durrant
Author-Email: mdurrant[at]stanford.edu
Home-Page: https://github.com/bhattlab/MGEfinder
License: MIT
Requires-Dist: click (==7.0)
Requires-Dist: pandas (==0.25.3)
Requires-Dist: biopython (==1.75)
Requires-Dist: pysam (==0.15.3)
Requires-Dist: editdistance
Requires-Dist: scipy (==1.4.0)
Requires-Dist: networkx (==2.4)
Requires-Dist: tqdm (==4.40.2)
Description-Content-Type: text/markdown
[Description omitted; length: 4125 characters]

WHEEL

Wheel-Version: 1.0
Generator: bdist_wheel (0.34.2)
Root-Is-Purelib: true
Tag: py2-none-any
Tag: py3-none-any

RECORD

Path Digest Size
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mgefinder/blasttools.py sha256=vk0QzJJz7oiLPwmsQoS26159EoxKcqiGn0aIAlcNy-w 1154
mgefinder/bowtie2tools.py sha256=5SehOf3rfPI-EhHqqMPk_RSWhcQjjiNOBxorzDrHIfw 3945
mgefinder/bwatools.py sha256=JUSSt2hEE6vo9GYH6uLL_9ELVuZkEJVkpDyCxw2Njxo 5128
mgefinder/cdhittools.py sha256=OSLDLTYWMruh_ZJ9xEg1QIgyzFuEw-jUMsFVvW9nUxk 2382
mgefinder/clusterseq.py sha256=Lsy9gy6niwET0-uZwm9nwAr3Ee_wbpBtTDjXMrfxoHs 6870
mgefinder/dependencies.py sha256=rX9m-Y9W4zRZ0oW5EYHwAglCcIEWhsGA8nd8clCASKI 1774
mgefinder/embosstools.py sha256=WipQk24YjpTfBx2QdQdrIdagpREwNSyGrlOGCxBv-6E 938
mgefinder/fastatools.py sha256=-v7KUM78CoIlPNQhODSxXX-9f6EJDD-_fkGW4spTePw 3888
mgefinder/find.py sha256=8YlDtMqhi_AnxGmOVhTahFSa84jf-OnBrTwAs0Fdmxo 43012
mgefinder/formatbam.py sha256=F7QuagDxuWU2kgY_rB5ZFJcr4-gCWvVFPZVDKAGZl4E 3347
mgefinder/genotype.py sha256=Qe6rcRevU9FruMib9ysTtdLvF19Vr7TI_I3sMe-PdHo 16085
mgefinder/help.py sha256=A5l_Ge64QkYyL8Tzj1oF1o0pq6VZBA-QDQ4VlAsvCg8 1104
mgefinder/inferseq.py sha256=3JEWoxUyzY6da4ywGovSVktM9z4TUODZoJ-Miy3DY4w 17156
mgefinder/inferseqassembly.py sha256=K2tumEjj8X-4TvYQZcj0DSyEAxyAI0OVialIw2zLNXU 15739
mgefinder/inferseqdatabase.py sha256=2tk9_frfnRKjdgu0768YxroqeAAK7XJnMMJmEXX9y9Y 12433
mgefinder/inferseqoverlap.py sha256=wGd-n2NTnV2wzkxEtMZ52sivFC10j5Q3C0P5MeLEXpY 6391
mgefinder/inferseqreference.py sha256=kNl6h9nUwn4HVSJKLSIph3M7pbdhN3aHlMha_JDQL-E 2268
mgefinder/main.py sha256=V8OPGNpmUdVLqvMDw5NZp63sTo30Kz7ieDHppCz0pLk 32419
mgefinder/makedatabase.py sha256=ghJHyUkH3IA3WLT0vuEDSQ3r0UeIW4NEVNzvBojq4eQ 6895
mgefinder/makefasta.py sha256=1GIiwkUmXB30xravzWM5BL8TNMdouujsTpEiulGlh8k 1822
mgefinder/misc.py sha256=G8_WBQyZaVn4MUOr93FhwLf2sWGh5dEDiLvsNIpyPEM 3362
mgefinder/pair.py sha256=W1RccWYOKRa4AFEal7xw3Fa-GjM8xZMVj0i9UrPWzRI 15694
mgefinder/pysamtools.py sha256=Y6S1ZVwE-U5CqOMn1b0eRTLDahldiNagciJjHvulDUk 5897
mgefinder/recall.py sha256=noDq8J_ae3u3YIn8NmeLYswhzODUtEyGeDZAJiDcIzU 6360
mgefinder/samtools.py sha256=oJ3-_sD7Vyll1CZJzVHuCpSbNGAM9F4PchqnhR_X5Cg 887
mgefinder/sctools.py sha256=2s7L6b4WEGfgcbMTEMaKkbcUbwj-nSC90UtdUiOlcXs 5701
mgefinder/summarize.py sha256=tE8G2Eo64nS-QiV8ofpXP-nUSmhaJVjTx_PDdhQ-UGE 8472
mgefinder/terminustrie.py sha256=hfr4xLHZq49CJ64rGGd3X7ZBUkplOTcjLEqpJCyoRVg 10776
mgefinder/wholegenome.py sha256=PE-a4-E7BbhRR-7KpjQtvbiTin_sm7-iSy4zfxPQJgg 3214
mgefinder/workflow.py sha256=_CXHNj6gNaHe-uVgCfRPxOlXyFDXDSVvKVSb_4Jv4X8 843
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mgefinder/workflow/denovo.sensitive.Snakefile sha256=EdQ2OG9jrYqAPYd8LlhTnEW8FV1RdwZ9T9fgFgY3yDQ 13932
mgefinder/workflow/denovo.sensitive.config.yml sha256=JXa85BLdgDbIldSC3Dg2ut4P03e48maIGxBlLcRJd70 822
mgefinder-1.0.6.dist-info/LICENSE.txt sha256=2bm9uFabQZ3Ykb_SaSU_uUbAj2-htc6WJQmS_65qD00 1073
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mgefinder-1.0.6.dist-info/entry_points.txt sha256=_kcre1KkeaRmurPKspN114BR3NolprERTm6h6q0Sleo 50
mgefinder-1.0.6.dist-info/top_level.txt sha256=ZZVXXs_xpb2KgXK7EmGb7zYj7w_spZNEZbntTo77W6c 10
mgefinder-1.0.6.dist-info/RECORD — —

top_level.txt

mgefinder

entry_points.txt

[console_scripts]
mgefinder = mgefinder.main:cli