Path |
Digest |
Size |
mindsponge/__init__.py |
sha256=S7mtmwkYED3ea34osRxq7-G1wKob2H5Mj0Pajmg2JvE
|
3440 |
mindsponge/callback/__init__.py |
sha256=7sg8j5lsL1TWA02OjQ1ADCtLxqeX_0mvRPh4mSsGGC0
|
1102 |
mindsponge/callback/h5md.py |
sha256=3IJo2MCky81diBbCpJXO3cFSOCaIAb72fd8T-JMOzZ4
|
8488 |
mindsponge/callback/information.py |
sha256=msCBY17lnPTk3HKs6PmnxJYnVuV3f2wpizn3Vh6fo5M
|
5098 |
mindsponge/cell/__init__.py |
sha256=cox4l-h2WBI0QsudP5BB6J6E94hFkrEViK9_F1xG04s
|
1311 |
mindsponge/cell/amp.py |
sha256=6ybghVWXi-1OuwocqbkffdOQwcvoJ_S87MiEoZFUS4E
|
1802 |
mindsponge/cell/basic.py |
sha256=SBY4xtX7fZzUZfKvPTKyB17T5l2nEnb_3IvvmmSieL4
|
21428 |
mindsponge/cell/equivariant.py |
sha256=YdnueesrYvjCf2ReEj51J8ctQxlu-jPNoTx8kW3Lpus
|
13131 |
mindsponge/cell/initializer.py |
sha256=z8YmdVl7lZ6hUkTsI4b8Bupqtd3cpEy-cMOIbgvjL6o
|
1359 |
mindsponge/cell/mask.py |
sha256=TeB3Xg2VmqBqod_nnJomJFhsH0KKsiwI1_tdOW_3eIc
|
1907 |
mindsponge/cell/msa.py |
sha256=hrxMyH6BqSMOCp9NY8ByWC1KpBCi0IcITUZu_7ZKxwg
|
17731 |
mindsponge/cell/transition.py |
sha256=KbgKEnBu33lHWJtcMs3AQXD1ehv-mKjKrlByOURwy68
|
7001 |
mindsponge/cell/triangle.py |
sha256=TQYjgSU2bGpH28gu8qmPZ1r1Os-sCHtpD-TIoCOa_QI
|
28584 |
mindsponge/colvar/__init__.py |
sha256=1jH9JAj_zrm8MB71ErzyUL7gMVpTkunP-oARjDmN9is
|
1596 |
mindsponge/colvar/atoms.py |
sha256=2BU-NoLfnshitn3s_JTiLp_9gCOyTGdG3gH0YSywB0U
|
7045 |
mindsponge/colvar/base.py |
sha256=--TWyz0j9b3gzKl2rIp77N7gzw9wlDR1LRJaD6uaF6g
|
5040 |
mindsponge/colvar/bonded.py |
sha256=eeh1-SeOXHZodLpsMzv4jQPiGEinhF0RQR_7Y4gHX2Y
|
4979 |
mindsponge/colvar/colvar.py |
sha256=jnJ7C50UlgQKLj-yNAWixcxQAWDYPIJrJZyhLOJJUZo
|
3995 |
mindsponge/colvar/index.py |
sha256=ZWlW3eK62agDXlo8thvfW9dIeTJNI5ml4GebIpsPQ3Q
|
7262 |
mindsponge/colvar/position.py |
sha256=Y6ZDefXawcbhwaTg646NBXX6l0Yl03owwEwAH_6zvUg
|
1956 |
mindsponge/common/__init__.py |
sha256=2F3ATrlwsqOy8shAPVbgbf1OvWGVLE0c3GbNZsW6ySo
|
2400 |
mindsponge/common/config_load.py |
sha256=TlUODnYuPPFwcADpZeMHWMyEY9FjCdiarUTEV6PeJBw
|
1482 |
mindsponge/common/geometry.py |
sha256=PaFNUUXJZjIddiTK04JmJBWNjZCz4q9aw7kexaBsrBI
|
57115 |
mindsponge/common/protein.py |
sha256=rmnatVVs_rWv29IeyBMSxMT8GAtIl6b3M67LHJyXFsM
|
13663 |
mindsponge/common/residue_constants.py |
sha256=EIChHL1jlwZeA9t64PV0btmhXGcA5kJV1nngJa_v9yg
|
36743 |
mindsponge/common/stereo_chemical_props.txt |
sha256=OJ7ONee1BuJnzRhsck21FzlOkjGKnpwo6I9KtQZXWWE
|
15746 |
mindsponge/common/utils.py |
sha256=uiDLN2ihQto3Yw9Uo0b6GRAqvrxORF1G4CuoUx2HWCA
|
38794 |
mindsponge/control/__init__.py |
sha256=WvNjWMXzySXTV2kTbqgXm5BKatOr5VGwUgaBXnChkOY
|
1480 |
mindsponge/control/controller.py |
sha256=Wj4vitLjeSItUVSfJDTFeFP6CQXDD3KlEpZZLVzn6IE
|
9658 |
mindsponge/control/barostat/__init__.py |
sha256=XaDBLPws7i5885v68d_QWcyepnhFFSbwUcla8aarfEw
|
1122 |
mindsponge/control/barostat/barostat.py |
sha256=kySWkqJ8-EO3bBDSP8pn__VMtGmtPdImHb1oLXRvXNI
|
7299 |
mindsponge/control/barostat/berendsen.py |
sha256=DGv_OXbqI7o4k9UxmzbrWPSYBYjhWojDtwDLqwCV_c0
|
4807 |
mindsponge/control/constraint/__init__.py |
sha256=Tfj28uNnbyJv2Ed7b1jhCHkk4mwYu9kCwoSdj992xAw
|
1102 |
mindsponge/control/constraint/constraint.py |
sha256=XEDqGy1xc4806eIVGMf7itg1EuJgFENaPIN9W3rS8CM
|
5928 |
mindsponge/control/constraint/lincs.py |
sha256=GTSMUAuc5md5lOaVCOkHz8j4-qvtR0_LY1Ww_COHsoY
|
7351 |
mindsponge/control/integrator/__init__.py |
sha256=IePZEY1nErz6aua-NXh0423tAVP9hE5o_mkW5uYTIgg
|
1226 |
mindsponge/control/integrator/brownian.py |
sha256=VRRZ6v1B4F6NzsaGuHb5qJ5dDbE2No85EPXNxO5BSIw
|
5203 |
mindsponge/control/integrator/integrator.py |
sha256=6hJLphewEvtKQX96hfsAmNxbILz3hplbbOvWH7jXsek
|
9473 |
mindsponge/control/integrator/leapfrog.py |
sha256=53NMa20WB-Jzuajd8xSb0lG2XRoWfBGSbwb3T8lDaz0
|
4830 |
mindsponge/control/integrator/velocityverlet.py |
sha256=jfsHObrcbIYLG4qj6MljBK2KEAP49RUSgnvFh2osN2s
|
5899 |
mindsponge/control/thermostat/__init__.py |
sha256=VzRuC-yMSzxZGjpBPYEFjwAty5-yrgNQEWy7hMRXVJ0
|
1177 |
mindsponge/control/thermostat/berendsen.py |
sha256=0UTwYSn_5KrMcYCvoureWbpkN2F6UMJTCC5sCkbScUM
|
4306 |
mindsponge/control/thermostat/langevin.py |
sha256=c8_ZPuJY7jV8fscb8-kmzFZ7xeMsEtFc7AeEbv5oQYQ
|
4983 |
mindsponge/control/thermostat/thermostat.py |
sha256=6MNhmyfH3Vi13l0MU2AAdQZFxkrx7gF7SgTnop2bb1o
|
6156 |
mindsponge/core/__init__.py |
sha256=zgSMaWSGIHufpDMnZTEe2UMPakGTRgzVz2wtMZlN_2A
|
1266 |
mindsponge/core/sponge.py |
sha256=jw3rLuLH1YCmlxsJGIaMwLUUcuFwGbWFM3Od_uI97Mc
|
21327 |
mindsponge/core/analysis/__init__.py |
sha256=e0M2I6qbinstxzbm-NbiNw0hTNkkGieWJ4pyv3YLN1g
|
1065 |
mindsponge/core/analysis/analyse.py |
sha256=NWUfdQk46RoSOw7tT0wIMaeyLPzxzIRGXClLyCX-O5I
|
3478 |
mindsponge/core/simulation/__init__.py |
sha256=IpeYGnwDxdGAOf2cnhmCNMkVvUyeI2-mLRiW2fCTle8
|
1126 |
mindsponge/core/simulation/run.py |
sha256=g8psOKobCb91Cv0k58zq7S3QpuVzQHzeA24JE52AkaE
|
5335 |
mindsponge/core/simulation/simulation.py |
sha256=FFf4qYEIkglh6Q1QkjY9yId07jqeRzxCssLy-0zz5YU
|
9185 |
mindsponge/core/wrapper/__init__.py |
sha256=8W5eJqoxGPF6M2V7mNR1y2CLq6dQR-_rIGp7qnmjELc
|
1175 |
mindsponge/core/wrapper/its.py |
sha256=3lCv7-GBleJDHr7jBvBKE4ZXXlA8QIsKSDocDFtXGwg
|
2581 |
mindsponge/core/wrapper/remd.py |
sha256=FZXkVtfJoVVQSlmO1mHiEXDQqPv9yKXFnp2nNPeM-G0
|
2585 |
mindsponge/core/wrapper/summation.py |
sha256=cNh-b-x7V1tyrmZlN4H-dqW6w75xXPC24APgk4eqBVY
|
2814 |
mindsponge/core/wrapper/wrapper.py |
sha256=zeM35epE-eKAv6B0-6tG8iDYatjNQotknaYaRxLAKMk
|
4056 |
mindsponge/data/__init__.py |
sha256=01nG2lPb3bnEOuXqMzSe9MY8FxZ1k23ZN_lEDK5TgUo
|
2415 |
mindsponge/data/data.py |
sha256=FtRs0G4AQdD2miHukeY6nOYROEE8Hwhbe0GwZAzMAaA
|
4851 |
mindsponge/data/data_transform.py |
sha256=nG-GNNbw4NwQTIoUsom1R_UqnVakUI12vv9eb6-6scs
|
49337 |
mindsponge/data/elements.py |
sha256=dJWuyvZZnifyRCWZY6l8PTTMb5Cc747DoOJawvl7K9s
|
7340 |
mindsponge/data/hyperparam.py |
sha256=lEBsCkklZbPvFrDdwiBomtUDlp-N7LM5MFgeKdLOFjE
|
10266 |
mindsponge/data/parameters.py |
sha256=dDa6LPOrUcaYxj_ZifOhG_jB8ioDhLpBigtrHrKCTvs
|
29655 |
mindsponge/data/export/__init__.py |
sha256=wKt5Z6R34y9FtKMwrfMdh9wu0zY85jz1AEaiwhaOcWE
|
1122 |
mindsponge/data/export/h5md.py |
sha256=qebENLXPYYHqdwn-rPOk1bV4RHCI9owLYtDtiDrcFF8
|
19169 |
mindsponge/data/export/xyz.py |
sha256=gI7fLJflPr1kZWuNm9vY5jB61rnJkVLdSDAQ5C5BMOE
|
1916 |
mindsponge/data/forcefield/__init__.py |
sha256=hoanQ8ccWF0h35VPnmIVwETQTFRdYpbHIYN0aThSmz0
|
1090 |
mindsponge/data/forcefield/amber.ff14sb.yaml |
sha256=NuXhoFnrP1VyEFgyCjt5G7iZQpkICl6yiQhtlIygjmo
|
67680 |
mindsponge/data/forcefield/forcefield.py |
sha256=J5P40UdOldBpuH0Bf0qQMAwMLMe6NP1y_qNCtL9MGZw
|
2898 |
mindsponge/data/forcefield/spce.yaml |
sha256=90If2oWBFEiXgHMAbv3Hix1e6dqjYZhmEC-N9G4T5Do
|
626 |
mindsponge/data/forcefield/tip3p.yaml |
sha256=cIwWkCo-VZHpgLtppEAhdY0KYEVEFwE5wF_a4uK_ARA
|
634 |
mindsponge/data/template/__init__.py |
sha256=lf3SlL1gl_KGhcAKPjJCkzIMqaGLllCskjjrpz4J4C4
|
1153 |
mindsponge/data/template/protein0.yaml |
sha256=Sh2cxBLfwtvJ-ID10-9brNdyK4a36AlbfzSCOB_lVnI
|
33103 |
mindsponge/data/template/template.py |
sha256=wD76G0rnyYRIDDYrF0teR1HsfDweqIh4hk7n3SeotMo
|
4913 |
mindsponge/data/template/water.spce.yaml |
sha256=nD7MzS3MdXxEzqL61BvSKA2YrPA_ZVN_OSayaBpkJSo
|
275 |
mindsponge/data/template/water.tip3p.yaml |
sha256=J-7ZCn1jqqJbsYXvuDVX4ubzqRSZ6MPZydAOJM0JSag
|
233 |
mindsponge/data/template/water_3p.yaml |
sha256=htDahAHXM-La57bOCz0cnIJH-2g5qiGoZHdW15yug08
|
214 |
mindsponge/function/__init__.py |
sha256=uNkz6I1r1IlV8ghgImM-Z3dmm8T4hxZSb6YKq4sSz8E
|
1206 |
mindsponge/function/functions.py |
sha256=JZo-oNS-KUhiAXy5XUgmn2dzS7Ak6PgwxtPXCumF0e0
|
31510 |
mindsponge/function/operations.py |
sha256=WvaFEuvGBwISYTS9YnleTarvBMY0_yv5pQnHPJsTtNU
|
16410 |
mindsponge/function/units.py |
sha256=yYQxaxACuT0XPJ_ObVc5cJ1DLlgnmFKjfpifAT_ilvg
|
27361 |
mindsponge/metrics/__init__.py |
sha256=576Etjggog_NxHFjmGW-WaLyjcFWiGv7h_VcSuYGjEQ
|
1897 |
mindsponge/metrics/metrics.py |
sha256=q5bTYG9AV4J3l11Hi27ihQBbNnpT1DYPli6y8nGcj-o
|
13857 |
mindsponge/metrics/structure_violations.py |
sha256=-krX73EqiJxJL1QT2R8R1HwS9C0TCYitjkfXEUCyL3k
|
66124 |
mindsponge/ops/__init__.py |
sha256=MY1RLJFyRr6XFpb1Wh3QAFM6n-j7fuV3MAi_6n4tK3A
|
777 |
mindsponge/ops/cpu/__init__.py |
sha256=VSCe9RxeuVK-ZEmSJLN4lhxTziFOwpSZ5GDD5O7VzKI
|
782 |
mindsponge/ops/cpu/neighborlistop.py |
sha256=hLoMKX1kewAd5h_-DBEJ2Ux0CXAJ6uD0D2Ks0ADbUAY
|
3667 |
mindsponge/ops/gpu/__init__.py |
sha256=VSCe9RxeuVK-ZEmSJLN4lhxTziFOwpSZ5GDD5O7VzKI
|
782 |
mindsponge/ops/gpu/neighborlistop.py |
sha256=UIxY7IX1MinpA4A7-2-XucDrbTQfGCKN3gXCMJSUDpY
|
3713 |
mindsponge/optimizer/__init__.py |
sha256=bulduY3KEkhCkqpMGEuS2RrCMWpdLgG8yt49BaxZ9ng
|
1174 |
mindsponge/optimizer/dynamics.py |
sha256=XzOPCBniCnYK3OsbnhV1LmV20oFmnYU3hHTnimjPFgI
|
5486 |
mindsponge/optimizer/steepest.py |
sha256=twXHnUu5dBKeY5g3Q-74rJeRLgfAs_Ik6XgZbnvdO5s
|
1708 |
mindsponge/optimizer/updater.py |
sha256=Snlx1oQKTO9zapZvtJFqcBvTAfpsFAIJlIc3cBAcCTQ
|
13428 |
mindsponge/partition/__init__.py |
sha256=HnXGGYiXtbnZ9r2un4oSOVZ_7tVb1wnAzTvi52Yy1sw
|
1270 |
mindsponge/partition/distance.py |
sha256=VpcrHmiJmUz2d1EkicgPyNKUrSU0OHsxM6Wauped_vw
|
9658 |
mindsponge/partition/fullconnect.py |
sha256=f7DFLVUW09AQXGZmsa-r9DT0ufAkG4-7eeXRx8HPDlg
|
4510 |
mindsponge/partition/grids.py |
sha256=aJnlv8kJzToLMAawy1q_Mi5_6uF4Lb0A2INnQb4D7bc
|
20680 |
mindsponge/partition/neighbourlist.py |
sha256=izUN1oFcW4cnKanwjiCWBXLfZWgTy76Qk6YehQeza8k
|
10264 |
mindsponge/pipeline/__init__.py |
sha256=U_90gd2_ZJ7tUfqfLvynuHx1wccXl1WyIuV5n-z4sI0
|
1020 |
mindsponge/pipeline/pipeline.py |
sha256=695TOOGs472j_9Zdb4H9ZVktAZnEzsrCWTf2MtjHvRc
|
3765 |
mindsponge/pipeline/cell/__init__.py |
sha256=5Gn8XbRGb2Z7Hqn7452D05glGv5AUAs9boGhgx5bGu4
|
1554 |
mindsponge/pipeline/cell/amp.py |
sha256=epk1tA_iBtamBjNGNV44HNG9YTq0OUUxdS8MfqbC-Gc
|
1802 |
mindsponge/pipeline/cell/basic.py |
sha256=SCcFz2JW4IBnZyQzFwHyd6bo8tCUFDfb6Gz62fDHn8A
|
21438 |
mindsponge/pipeline/cell/equivariant.py |
sha256=fKcsjTtYfuXuyXP9Mj8Z7kt_7FWSTq6UUJ3783Favz0
|
13149 |
mindsponge/pipeline/cell/initializer.py |
sha256=vOwfCbcMfmNYEix-ydfdS4LASpwTTqHhcVV8YVlxSi0
|
1359 |
mindsponge/pipeline/cell/mask.py |
sha256=Y7OgB8OwfGOWumXXXKsD2UTmoXOBPr4gtqEN6UHfIFQ
|
1576 |
mindsponge/pipeline/cell/msa.py |
sha256=H0sS715CXxCAQHZgyEynd75PbwNhAs1-t8aCq6wZy0Y
|
17860 |
mindsponge/pipeline/cell/transition.py |
sha256=5H6RTRKQSk-C9lVlnwiF5-e9oTx901pYVy7meHdRUDc
|
6985 |
mindsponge/pipeline/cell/triangle.py |
sha256=QQbNH2FscoghmJtnQFefDGoMVBHf1uWqGewEPIJkvac
|
28743 |
mindsponge/pipeline/dataset/__init__.py |
sha256=XwDhSxAs4BVG8sDSi64tVlq0DIw0ghPXKOOh1hyR4ro
|
1093 |
mindsponge/pipeline/dataset/dataset.py |
sha256=m5KeBO0XEWntiH-z7pcbHhrng6ByrthIEsYCj0hwFJU
|
1612 |
mindsponge/pipeline/dataset/pdbbind/__init__.py |
sha256=CxwUIhTvoIwqj3wtgWFPBZNMrKcobttKcMsdTJCKtfQ
|
1043 |
mindsponge/pipeline/dataset/pdbbind/pdbbind.py |
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|
3262 |
mindsponge/pipeline/dataset/psp/__init__.py |
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1005 |
mindsponge/pipeline/dataset/psp/psp.py |
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5588 |
mindsponge/pipeline/models/__init__.py |
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1395 |
mindsponge/pipeline/models/model.py |
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|
3368 |
mindsponge/pipeline/models/colabdesign/__init__.py |
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|
1146 |
mindsponge/pipeline/models/colabdesign/colabdesign.py |
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|
4401 |
mindsponge/pipeline/models/colabdesign/colabdesign_configuratuin.py |
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1129 |
mindsponge/pipeline/models/colabdesign/colabdesign_data.py |
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4552 |
mindsponge/pipeline/models/colabdesign/colabdesign_dataset.py |
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|
4073 |
mindsponge/pipeline/models/colabdesign/nn_arch.py |
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|
6473 |
mindsponge/pipeline/models/colabdesign/module/__init__.py |
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987 |
mindsponge/pipeline/models/colabdesign/module/design_wrapcell.py |
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4631 |
mindsponge/pipeline/models/colabdesign/module/loss_design.py |
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16790 |
mindsponge/pipeline/models/colabdesign/module/utils.py |
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|
2735 |
mindsponge/pipeline/models/deepdr/__init__.py |
sha256=b4q0B26-w6B450WKaOBhQaKmjsClY63pbFf7f__Yv8k
|
1051 |
mindsponge/pipeline/models/deepdr/deepdr.py |
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|
6299 |
mindsponge/pipeline/models/deepdr/deepdr_configuration.py |
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1070 |
mindsponge/pipeline/models/deepdr/deepdr_data.py |
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|
2573 |
mindsponge/pipeline/models/deepdr/deepdr_dataset.py |
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|
6547 |
mindsponge/pipeline/models/deepdr/mda_nn_arch.py |
sha256=Q7ADg9w4sDh-uBw23N6V-Flfc3_bEOf6uJaUObzGEKI
|
6205 |
mindsponge/pipeline/models/deepdr/vae_nn_arch.py |
sha256=SNuIpOI3SCPE1GLp7Vpq2T1GIPKZZFX7yzsXUACdLBk
|
5073 |
mindsponge/pipeline/models/graphdta/__init__.py |
sha256=hASpvoc31uXWtuYgHcWVVibKCaPeONGtvqrP1nUQt_s
|
1125 |
mindsponge/pipeline/models/graphdta/data_process.py |
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