napari-bacseg

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1.0.17 napari_bacseg-1.0.17-py3-none-any.whl

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Project: napari-bacseg
Version: 1.0.17
Filename: napari_bacseg-1.0.17-py3-none-any.whl
Download: [link]
Size: 404784
MD5: 119b773b6e8db49e4515f9efee4cbe73
SHA256: 69aeadd8ff5e754e95cadf26a7be8a7134fda38c6fc5b81ee1aea25c327aec26
Uploaded: 2024-04-12 09:38:22 +0000

dist-info

METADATA

Metadata-Version: 2.1
Name: napari-bacseg
Version: 1.0.17
Summary: Bacterial segmentation and analysis platform than can inport/export files in multiple formats. Integrating many tools such as Cellpose, ColiCoords, Oufti/MicrobeTracker.
Author-Email: Piers Turner <piers.turner[at]physics.ox.ac.uk>
Project-Url: Homepage, https://github.com/piedrro/napari-bacseg
Project-Url: Bug Tracker, https://github.com/piedrro/napari-bacseg/issues
Classifier: Framework :: napari
Classifier: Environment :: Plugins
Classifier: License :: OSI Approved :: BSD License
Classifier: Programming Language :: Python :: 3.9
Classifier: Operating System :: OS Independent
Requires-Python: >=3.9
Requires-Dist: napari[all] (>=0.4.19)
Requires-Dist: torch
Requires-Dist: cellpose (>=3.0.1)
Requires-Dist: opencv-python
Requires-Dist: picassosr (==0.6.5)
Requires-Dist: numpy
Requires-Dist: pyqt5
Requires-Dist: pyqt6
Requires-Dist: qtpy
Requires-Dist: scipy
Requires-Dist: natsort
Requires-Dist: tqdm
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Requires-Dist: mat4py
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Requires-Dist: matplotlib
Requires-Dist: scikit-image
Requires-Dist: roifile
Requires-Dist: openpyxl
Requires-Dist: shapely
Requires-Dist: colicoords
Requires-Dist: psutil
Requires-Dist: xmltodict
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Requires-Dist: tiler
Requires-Dist: imageio-ffmpeg
Requires-Dist: aicspylibczi
Requires-Dist: czifile
Requires-Dist: omnipose
Requires-Dist: h5py
Requires-Dist: tox; extra == "testing"
Requires-Dist: pytest; extra == "testing"
Requires-Dist: pytest-cov; extra == "testing"
Requires-Dist: pytest-qt; extra == "testing"
Requires-Dist: napari; extra == "testing"
Requires-Dist: pyqt5; extra == "testing"
Provides-Extra: testing
Description-Content-Type: text/markdown
License-File: LICENSE
[Description omitted; length: 3802 characters]

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napari_bacseg

entry_points.txt

napari-bacseg = napari_bacseg:napari.yaml