Path |
Digest |
Size |
cy_build.py |
sha256=ub5vRE3oT8pcGmLfuTB411ciZ84awfkZ92Yr8DErYHA
|
3094 |
ngsfragments/.DS_Store |
sha256=_lY80BZubUwvrA5k6CGW_yWVx8ofpLimWNyjzXxZhf8
|
10244 |
ngsfragments/__init__.py |
sha256=VwPxSoWqBUS8j0QX0jH6SfEfXjlgRbUeGcQJFarl8ag
|
373 |
ngsfragments/config.py |
sha256=fkXtvZ3EcYMpT1R8a03zbMJmqphRC-3cNa2MDh3oZ90
|
187 |
ngsfragments/correct/__init__.py |
sha256=9OUsoDS74KogNCCrA1n9xtSi0-Qh62a7uySGPHp0B_E
|
167 |
ngsfragments/correct/correct_intervals.py |
sha256=-vGI1WGTwYzmgeRgLAYfSfNZX005ZycDPTBsCoBe-xk
|
2538 |
ngsfragments/correct/correction.py |
sha256=IbLvwvG4TJV1kttPbzKt0hhO7ihykJHUmhBZQZ_5138
|
8818 |
ngsfragments/correct/cylowess/__init__.py |
sha256=yjPxZz5vGSCV5MEnU8UbVZyg_ihLWi_BP-N2kjva0QI
|
92 |
ngsfragments/correct/cylowess/cylowess.c |
sha256=YTIW4QlR2B-BVJOdUPwzT-7stEqHDfj7dzF2YKeD8JU
|
667778 |
ngsfragments/correct/cylowess/cylowess.cpython-310-darwin.so |
sha256=R13CzssHRbmDJl7DzeNoF_j16NengKdIcwxngHpaENM
|
122648 |
ngsfragments/correct/cylowess/cylowess.cpython-311-darwin.so |
sha256=72uBcox7SaRco3Idw2mSQETQg6rIfvpf02wnLSxT-HA
|
140360 |
ngsfragments/correct/cylowess/cylowess.pyx |
sha256=oowfEpKmEjUd2u2yrBMXCiXxg2xP6RMcvObjJZCkDxM
|
21292 |
ngsfragments/coverage/__init__.py |
sha256=miKf6ZqyZfg5eWFa3ws_IvDYoWMIu02lN9nS18zg3Eg
|
92 |
ngsfragments/coverage/coverage.py |
sha256=eUkzgfo9vBNO-D_jAQecWviWwRJqGntFSyW2X_Ok8h0
|
7595 |
ngsfragments/coverage/midpoint.py |
sha256=fKWXo3jgntuwxeDbBfPLRxiGNPPZl0gnZMXQCcT1kD0
|
903 |
ngsfragments/coverage/wps.py |
sha256=wOhpeqtZdta5nndSPIiHIenZjuzV1Bv2TFx9HZmW_mQ
|
5154 |
ngsfragments/fragments.py |
sha256=RHu2aCX6Wo8aUnllUWi6RDDp30AcJjjBbN_JrhWEuAU
|
4581 |
ngsfragments/io/__init__.py |
sha256=JYHhX__u3I3t-ldZt3wz2aPi1se_v87RXdVbpV27YgI
|
82 |
ngsfragments/io/parse_sam/ReadSam.c |
sha256=IV0llzZnMsJFXaVqkKp3EV3c5QUoYSDIp4NRxGRkk9w
|
1525687 |
ngsfragments/io/parse_sam/ReadSam.cpython-311-darwin.so |
sha256=2chxZcPUjQAUSODkjTbRIO6behJfTSq19MMoBRQwJBI
|
1285520 |
ngsfragments/io/parse_sam/ReadSam.pxd |
sha256=tKQIpm8F7XRmfzkBgFVU2y7gjgv3PH20jNtOH39bEyQ
|
9455 |
ngsfragments/io/parse_sam/ReadSam.pyx |
sha256=aYxzlniWtaqLoys3I5ct46_XG-2mWN-tH_UmvQIRF_g
|
11542 |
ngsfragments/io/parse_sam/__init__.py |
sha256=cqtcL8wYIImV3-BWZYE4zQENAKaAzNhkkKhkzgCsn1A
|
99 |
ngsfragments/io/parse_sam/bounds_motif.c |
sha256=RfNMFeOMu8VOL6-uMMw8K2CjQnhuJw_9NrCeHPNPUiY
|
129268 |
ngsfragments/io/parse_sam/merge_bams.c |
sha256=u6xYIaHEg3mdHa4BZ-EStscrR13n7DbeRRORH5h1yuw
|
2480 |
ngsfragments/io/parse_sam/methyl_fragment_iter.c |
sha256=lJLU0wusFEgi5EAd8W8GbzGkDNyBL9wfZMFpaLN4J1Y
|
15777 |
ngsfragments/io/parse_sam/methyl_record.c |
sha256=TVZBZr2qEC1_CDfI0DE7cKE_5fLHbrcKv4nYrvNdVBY
|
9866 |
ngsfragments/io/parse_sam/methyl_size_split.c |
sha256=qVAcRPr8YkZ-sbZJp45XQpwYrqntbFcy2qHcGkQzIDM
|
22230 |
ngsfragments/io/parse_sam/read_intervals.c |
sha256=ncgFy5QaS1Begf6QxPW2DPCeNMADUiBwa6swgD8K4H4
|
7465 |
ngsfragments/io/parse_sam/read_intervals.h |
sha256=IoglKHRjPZxST_DgHNJFHl8_I3j9f9PEffHjvLzX6-c
|
15886 |
ngsfragments/io/parse_sam/read_iterator.c |
sha256=TnnLzFimcGB5qkEX_4n28J6SJ1Ce3bLDYgUbW9Iv1BI
|
3468 |
ngsfragments/io/parse_sam/read_name_store.c |
sha256=kSCcTt03yzdX1_3JrUCXlpmclVcxLtuyGPQDz2F53lM
|
1354 |
ngsfragments/io/parse_sam/reference_methyl.c |
sha256=D5OjVDdDak4Jl5mchX0klKEs_Yx4EM43MtjPnMhKFb0
|
3318 |
ngsfragments/io/read_sam.py |
sha256=yo1yP3N1tYccts9SjZLf6NhtdSyQBIOoCvsj8ZwJNLk
|
5404 |
ngsfragments/metrics/__init__.py |
sha256=hxoFk_8Ui4EfjjUaQOMsrDoufpUtC3C-XdxbM_FDuUo
|
139 |
ngsfragments/metrics/coverage_metrics.py |
sha256=MpUzrke6a4MGGtDfC80eomNnQUjXtR9Q3qM0IuRhZe0
|
5099 |
ngsfragments/metrics/gc_metrics.py |
sha256=qUaq8WFMkIFKQzENKcm-s1LQy77jf93m3G2cyaZ_obA
|
3820 |
ngsfragments/metrics/gene_activity.py |
sha256=VDKMJ2aOX6kIGjjPNZzEZ3aE0R_aSyax9GlEN2hQBv8
|
11718 |
ngsfragments/metrics/metric_utils.py |
sha256=9MF-yV1ljechMVI_cNUnjjO4YgLB1WLJTBccejef-Rs
|
1885 |
ngsfragments/metrics/tf_site_coverage.py |
sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU
|
0 |
ngsfragments/metrics/wps_metrics.py |
sha256=Tv7VYVCsbu_gf4rhDL3mApN-gLx5drjF9X2W3H6S4bI
|
6320 |
ngsfragments/peak_calling/CallPeaks.c |
sha256=pVs6g3c1fl9P6Uh1sXBsWAOgXA_J72zdJR0rQlmibRE
|
1184177 |
ngsfragments/peak_calling/CallPeaks.cpython-310-darwin.so |
sha256=eXHvCh23GSA575En1t6al9S_Wr8cCxr91sd8N3YsWnM
|
220576 |
ngsfragments/peak_calling/CallPeaks.cpython-311-darwin.so |
sha256=gSahDoQtK4HuwSxhk5oT7AiSblIk0uKytDBD4i25k00
|
254536 |
ngsfragments/peak_calling/CallPeaks.pxd |
sha256=whBTs1me-4QhLeIgIaoy6ZgRPiLEWRhGZe1TAIIkNnI
|
475 |
ngsfragments/peak_calling/CallPeaks.pyx |
sha256=ge_kDdcE-0QxbK-je8PTX_Q4TJyqQNWCtL8QwtE8orM
|
2786 |
ngsfragments/peak_calling/RunningMean.c |
sha256=Bz1U9Bo7L_ByOZZBH3m5YNdCNFSBJVdxEhgurDLtuus
|
1105774 |
ngsfragments/peak_calling/RunningMean.cpython-310-darwin.so |
sha256=-V1mUWnRczbFgo_F4KTmjvlJbGQHhnLV6mBryBqG8j0
|
142536 |
ngsfragments/peak_calling/RunningMean.cpython-311-darwin.so |
sha256=kFRJVQrtAC0TzqAfLp-WFv_Ar5ofB57R_KhQBedOU90
|
159808 |
ngsfragments/peak_calling/RunningMean.pxd |
sha256=GEqy2Wg_I58pxZNAhirQv6JwMYDoig6ACkiOUDtTmbg
|
519 |
ngsfragments/peak_calling/RunningMean.pyx |
sha256=4evluXIh5I-zpWokmWAWXNIZQwL-JnZZm5tjbEfpinU
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681 |
ngsfragments/peak_calling/RunningMedian.c |
sha256=GmgyLxkpNbP9DNboDvm4Q-YvgVPPcZpzdOOHbVtGjhc
|
1120876 |
ngsfragments/peak_calling/RunningMedian.cpython-310-darwin.so |
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143792 |
ngsfragments/peak_calling/RunningMedian.cpython-311-darwin.so |
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|
161160 |
ngsfragments/peak_calling/RunningMedian.pxd |
sha256=4zLoXE_pa25Hz3zTkAcrj3niEF9Ggn_2WTQq9TneqNI
|
557 |
ngsfragments/peak_calling/RunningMedian.pyx |
sha256=qOqwDxb0H53VMSR-JNDhLgA65Hls4ug8fa7xj9w7KAU
|
1973 |
ngsfragments/peak_calling/__init__.py |
sha256=7RYBDyjzzQoJ87iva9pw2WCfgbQVVqOCjb-qDbcEHAs
|
196 |
ngsfragments/peak_calling/running_mean.c |
sha256=uYmoqhfWGz3LuSltVXCRPAxaJ1g3hzO1QrBhznD3g3o
|
1056 |
ngsfragments/peak_calling/running_mean.h |
sha256=M0wBUU32HNOnK8sY5THa44zrA-uPnVRCpFuPTJ516g0
|
283 |
ngsfragments/peak_calling/sklist_pd.c |
sha256=Rof2QVS_ZUD-UVCjshXJap5bqqXgQWIsPGSmXzl0NTE
|
8413 |
ngsfragments/peak_calling/sklist_pd.h |
sha256=VX9MIxtk3Bv5U_NUoLBbKgkWsBSISDdfaHHq3jP0xaU
|
1158 |
ngsfragments/plot/__init__.py |
sha256=gXeM9f7Y0385oOTKe11b4Y5HSVsbVw-ZUnay7WXWkAI
|
75 |
ngsfragments/plot/plot_bokeh.py |
sha256=O-kp9qecclHj252o6vjDfOOgsq4m70uFxAWAbQLyOoo
|
4657 |
ngsfragments/plot/plot_plt.py |
sha256=LD1WArByKQrmicTxW0c44-wjj9Vhi3P5CHqbVMbGcMY
|
14126 |
ngsfragments/segment/__init__.py |
sha256=g8FZ3213BKgyF1BEu_hP-KmfinXTKyE5-IzQ1YzPJG0
|
181 |
ngsfragments/segment/cnv.py |
sha256=RLztCGLvapTGDVx4gLnyJL5ca359RolgL6cXmyzoHK8
|
4960 |
ngsfragments/segment/cnv_pipeline.py |
sha256=5hd61mnNi8lpteLt59JDlVStAD_AcdRtXd8bI4I9aqw
|
24602 |
ngsfragments/segment/cnv_utilities.py |
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16421 |
ngsfragments/segment/smooth_cnv/__init__.py |
sha256=WEUxZmIgfkUqK4_UjsAsop5T0G07viOGHmJs9_BrGag
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ngsfragments/segment/smooth_cnv/smoothCNV.c |
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2924 |
ngsfragments/segment/smooth_cnv/smoothCNV.h |
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ngsfragments/segment/smooth_cnv/smooth_cnv.c |
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1203020 |
ngsfragments/segment/smooth_cnv/smooth_cnv.cpython-310-darwin.so |
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ngsfragments/segment/smooth_cnv/smooth_cnv.cpython-311-darwin.so |
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176688 |
ngsfragments/segment/smooth_cnv/smooth_cnv.pxd |
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ngsfragments/segment/smooth_cnv/smooth_cnv.pyx |
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ngsfragments/sequence/__init__.py |
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ngsfragments/sequence/kmer_query.py |
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ngsfragments/sequence/sequence_query.py |
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ngsfragments/sequence/snp_calling/__init__.py |
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ngsfragments/sequence/snp_calling/pileup_iterator.c |
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ngsfragments/sequence/snp_calling/snp_calling.c |
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975270 |
ngsfragments/sequence/snp_calling/snp_calling.h |
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0 |
ngsfragments/sequence/snp_calling/snp_calling.pxd |
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ngsfragments/sequence/snp_calling/snp_calling.pyx |
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5077 |
ngsfragments/utilities.py |
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ngsfragments/version.py |
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ngsfragments-2.1.7.dist-info/LICENSE.md |
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17895 |
ngsfragments-2.1.7.dist-info/METADATA |
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ngsfragments-2.1.7.dist-info/WHEEL |
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ngsfragments-2.1.7.dist-info/RECORD |
— |
— |