Reverse Dependencies of nibabel
The following projects have a declared dependency on nibabel:
- PyMVPD-LITE — A python package for multivariate pattern dependence
- pynemaiqpet — Analysis of PET NEMA IQ phantom scans
- pynibs — A python toolbox to conduct non-invasive brain stimulation experiments (NIBS).
- pynipt-plugin-uncch-core — UNCCH core module for rsfMRI analysis - pynipt plugin
- PyNIT — Python NeuroImaging Toolkit
- pypet2bids — A python library for converting PET imaging and blood data to BIDS.
- pypmi — pypmi is a Python toolbox for working with data from the Parkinson's Progression Markers Initiative (PPMI)
- pyraug — Data Augmentation with VAE
- PySiTK — Python SimpleITK/WrapITK helper scripts
- pyslicetime — Python Slice Timing Correction
- pySPFM — A python package for Paradigm Free Mapping (3dPFM and 3dMEPFM).
- pysurfer — PySurfer: cortical surface visualization using Python.
- python-pySAP — PYthon Sparse data Analysis Package
- python3-utils-tdinoto — Useful wrapper functions for the most common python data types, and for nifti/dicom arrays.
- pytomography — Package to perform tomographic image reconstruction
- pyunc — Classes for reading UNC format MRI files
- pyvoxel — An AI-powered open-source medical image analysis toolbox
- pyVoxelStats — Python implementation of the VoxelStats toolbox for neuroimage analysis
- QbiPy — DCE-MRI analysis code from the QBI lab, University of Manchester
- qmenta-anon — The qmenta-anon library is used to anonymize files before transferring them to the QMENTA platform.
- qsmxt — no summary
- quantiphyse — Quantiphyse is a data viewer and analysis platform for volumetric medical imaging data
- quickshear — Quickshear Defacing for Neuroimages
- rabies — RABIES: Rodent Automated Bold Improvement of EPI Sequences.
- raclahe — Original package to support Region Adaptive Magnetic Resonance Image Enhancement for improving CNN based segmentation of the prostate and prostatic zones paper
- radifox — RADIFOX is the RADiological Image File Ontology eXtension, a Python package for the organization and management of medical images.
- radifox-utils — Medical image utilities provided with RADIFOX
- radtract — Radiomic Tractometry for advanced along-tract analysis of diffusion-weighted MRI
- radvis — A visualization tool for medical images
- react-fmri — A Python package that implements REACT: Receptor-Enriched Analysis of Functional Connectivity by Targets
- redbrick-sdk — RedBrick platform Python SDK!
- redbrick-slicer — RedBrick platform 3D Slicer Integration!
- regionconnect — IIT Human Brain Atlas regionconnect tool
- reliability-stability-calc — Calculation for relibability and stability three data sets
- reorient-nii — Load and reorient nifti images
- resomapper — Pipeline for processing MR images and generating parametric maps.
- rivuletpy — Rivuletpy: a powerful tool to automatically trace single neurons from 3D light microscopic images.
- RMTfunc — Eigenvalue unfolding and spectral observable computation
- rsHRF — BIDs App to retrieve the haemodynamic response function from resting state fMRI data
- sandi-python-toolbox — SANDI model fitting in python + BIDS handling
- scikit-rt — Toolkit for analysis of radiotherapy data
- scilpy — Scilpy: diffusion MRI tools and utilities
- SegRunLib — This is the module for medical images segmentation
- segviz — Show the image and label image overlay.
- sepal — Quantitative MRI processing
- shamo — A tool for electromagnetic modelling of the head and sensitivity analysis.
- shapeaxi — Shape Analysis Exploration and Interpretability
- siibra — siibra - Software interfaces for interacting with brain atlases
- simplebrainviewer — A simple brain viewer using matplotlib
- SkinSegmentator — Robust segmentation of skin surface in MR images.
- sleepytimes — Tools for EEG, ECoG, iEEG, especially for sleep
- slfmri — Helper for fmri analysis for dvm-shlee
- slicevis — A package for interactive slice visualization.
- SlideRunner_dataAccess — SlideRunner - data access package (slide access, database access)
- SLIX — SLIX allows an automated evaluation of SLI measurements and generates different parameter maps.
- smriprep — sMRIPrep (Structural MRI PREProcessing) pipeline
- sparcur — assorted
- spec2nii — Multi-format in vivo MR spectroscopy conversion to NIFTI
- spine-segmentation — Anatomical labeling of the spine in small field-of-view MRI scans
- splora — Python library to estimate neuronal activity-related, activity-inducing and innovaition signals, as well as estimating global fluctuations.
- stc2gii-hack — no summary
- strainmap — no summary
- SubBrainSegment — Package for subcortical brain segmentation
- surfdist — For calculating exact geodesic distances on cortical surface meshes
- surfplot — A package for publication-ready brain surface figures
- suspect — no summary
- swane — Standardized Workflow for Advanced Neuroimaging in Epilepsy
- t2qc — T2 QC
- tcsa — temporalis segmentation pipeline to assess CSA of temporalis muscle
- tedana — TE-Dependent Analysis (tedana) of multi-echo functional magnetic resonance imaging (fMRI) data.
- telenib — Fetch metadata from remote (https) nifti (gzipped or not).
- testkraken — Test workflows in a matrix of computational environments.
- threebrainpy — Your Advanced Electrode Localizer Viewer for Python
- tiger-Age — no summary
- tigersyn — Processing MRI images based on deep-learning
- torchio — Tools for medical image processing with PyTorch
- torchmed — A compagnon library for deep learning on medical imaging
- TotalSegmentator — Robust segmentation of 104 classes in CT images.
- TPTBox — A Torso Processing Toolbox capable of processing BIDS-compatible datasets, singular niftys, points of interests, segmentations, and much more.
- TractSeg — Fast and accurate segmentation of white matter bundles
- trx-python — Experiments with new file format for tractography
- tsvarana — Timeseries variance analysis for fMRI
- tvb-rest-client — A helper package for preparing and sending requests towards the TVB REST API
- ukat — UKRIN Kidney Analysis Toolbox
- umtk — A python library for medical image processing.
- usseg — Tools to segment doppler ultrasound signals from scan images.
- vanilla-roll — A simple array based volume renderer
- vb-toolbox — Library and command-line tool to calculate the Vogt-Bailey index of a dataset
- VBIndex — Library and command-line tool to calculate the Vogt-Bailey index of a dataset
- virtual-scanner — Virtual Scanner educational tool for MRI
- visbrain — Hardware-accelerated visualization suite for brain-data in Python
- vmat — virtual medical AI toolkit
- vnmrjpy — Handle VnmrJ MRI data and recostruction with Python
- volutil — Neuroimaging volume utilities
- voxelmorph — Image Registration with Convolutional Networks
- vs-tabletop — Virtual Scanner Tabletop Games
- warpkit — A python library for neuroimaging transformations
- whippersnappy — A package to plot and capture FastSurfer and FreeSurfer-style surface overlays.
- wonambi — Tools for EEG, ECoG, iEEG, especially for sleep
- yucca — The modern framework for sandbox experimentation and out-of-the box machine learning on medical data.