Path |
Digest |
Size |
pangtreebuild/__init__.py |
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pangtreebuild/__main__.py |
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pangtreebuild/logging.conf |
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pangtreebuild/affinity_tree/__init__.py |
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pangtreebuild/affinity_tree/builders.py |
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20420 |
pangtreebuild/affinity_tree/parameters.py |
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5082 |
pangtreebuild/affinity_tree/poa.py |
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pangtreebuild/affinity_tree/tree.py |
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10069 |
pangtreebuild/affinity_tree/bin/blosum80.mat |
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pangtreebuild/affinity_tree/bin/poa |
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pangtreebuild/mafgraph/__init__.py |
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pangtreebuild/mafgraph/mafreader.py |
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pangtreebuild/mafgraph/sorter.py |
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pangtreebuild/mafgraph/weighted_edges.py |
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pangtreebuild/mafgraph/graph/Arc.py |
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pangtreebuild/mafgraph/graph/Block.py |
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pangtreebuild/mafgraph/graph/EdgeInfo.py |
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pangtreebuild/mafgraph/graph/SequenceInfo.py |
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pangtreebuild/mafgraph/graph/__init__.py |
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pangtreebuild/pangenome/DAGMaf.py |
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pangtreebuild/pangenome/__init__.py |
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pangtreebuild/pangenome/builder.py |
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pangtreebuild/pangenome/graph.py |
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pangtreebuild/pangenome/builders/__init__.py |
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pangtreebuild/pangenome/builders/dagmaf2poagraph.py |
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pangtreebuild/pangenome/builders/maf2dagmaf.py |
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pangtreebuild/pangenome/builders/maf2poagraph.py |
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pangtreebuild/pangenome/builders/po2poagraph.py |
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pangtreebuild/pangenome/parameters/__init__.py |
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pangtreebuild/pangenome/parameters/missings.py |
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pangtreebuild/pangenome/parameters/msa.py |
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pangtreebuild/serialization/__init__.py |
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pangtreebuild/serialization/fasta.py |
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pangtreebuild/serialization/json.py |
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pangtreebuild/serialization/po.py |
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pangtreebuild/tests/__init__.py |
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pangtreebuild/tests/tests_affinity_tree/__init__.py |
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pangtreebuild/tests/tests_affinity_tree/tests_POTranslator.py |
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pangtreebuild/tests/tests_affinity_tree/tests_affinity.py |
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pangtreebuild/tests/tests_affinity_tree/__pycache__/__init__.cpython-38.pyc |
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pangtreebuild/tests/tests_affinity_tree/__pycache__/tests_POTranslator.cpython-38.pyc |
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pangtreebuild/tests/tests_affinity_tree/__pycache__/tests_affinity.cpython-38.pyc |
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pangtreebuild/tests/tests_pangenome/__init__.py |
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pangtreebuild/tests/tests_pangenome/seq_metadata.csv |
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pangtreebuild/tests/tests_pangenome/__pycache__/__init__.cpython-38.pyc |
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pangtreebuild/tests/tests_pangenome/__pycache__/tests_hello2.cpython-38.pyc |
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pangtreebuild/tests/tests_pangenome/builders/__init__.py |
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pangtreebuild/tests/tests_pangenome/builders/tests_dagmaf2poagraph.py |
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pangtreebuild/tests/tests_pangenome/builders/tests_dagmaf2poagraph_FakeFastaProvider.py |
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pangtreebuild/tests/tests_pangenome/builders/tests_maf2poagraph.py |
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pangtreebuild/tests/tests_pangenome/builders/tests_po2poagraph.py |
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pangtreebuild/tests/tests_pangenome/builders/__pycache__/__init__.cpython-38.pyc |
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pangtreebuild/tests/tests_pangenome/builders/__pycache__/tests_dagmaf2poagraph_ConstSymbolProvider.cpython-38.pyc |
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pangtreebuild/tests/tests_pangenome/builders/__pycache__/tests_dagmaf2poagraph_FakeFastaProvider.cpython-38.pyc |
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pangtreebuild/tests/tests_pangenome/builders/__pycache__/tests_maf2poagraph.cpython-38.pyc |
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pangtreebuild/tests/tests_pangenome/builders/__pycache__/tests_po2poagraph.cpython-38.pyc |
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pangtreebuild/tests/tests_pangenome/builders/maf_files/test_1_messy_sequences.maf |
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pangtreebuild/tests/tests_pangenome/builders/maf_files_with_cycles_or_reversion/test_0_simple.maf |
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pangtreebuild/tests/tests_pangenome/builders/maf_files_with_cycles_or_reversion/test_10_parallel_blocks_1st_and_2nd_merge_into_3rd.maf |
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pangtreebuild/tests/tests_pangenome/builders/maf_files_with_cycles_or_reversion/test_1_reversed_seq_in_one_block.maf |
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pangtreebuild/tests/tests_pangenome/builders/maf_files_with_cycles_or_reversion/test_2_seq_starts_in_second_block.maf |
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