| Path |
Digest |
Size |
| pathogenseq/__init__.py |
sha256=KlTkN_RTePYgxfq6j4FOKNepSIujtZRe0e3qOdPcPF4
|
260 |
| pathogenseq/bam.py |
sha256=if1zqNmaTY6-BWAWTYY-cG7gBnGeRRPjoVQUMK0S72g
|
19865 |
| pathogenseq/fasta.py |
sha256=C2hHeWP8WBmYoVMlqrWJ6DyKoIVYdJDsq__sWoXVcBY
|
9089 |
| pathogenseq/fastq.py |
sha256=GoGQmnoXRJNTe-L9BKXVclo6PLStJFiWFPaxcpQZ8zI
|
8988 |
| pathogenseq/files.py |
sha256=SSYL8-rxouMafeEEYhk5TUmAsDphbzsUqlWvNTWVtwc
|
6653 |
| pathogenseq/logger.py |
sha256=r7B8w29ovJXQDqOGh10I-Holt90F1JIZVgPKHYQMtZI
|
213 |
| pathogenseq/mfa.py |
sha256=Axnaqsz7WZfglWB3Nime8eMx68kAQlhNgIkfrTyUXuo
|
1349 |
| pathogenseq/mt_functions.py |
sha256=fzDf6ejuHwJzCyKOEoU1jGKu5vaGS1F_RqO3AVuhXbc
|
2704 |
| pathogenseq/mutation_db.py |
sha256=9pvIVm0l75-n-oYfR042BPF7Gt0THgfl7C3NV7RYK5I
|
2119 |
| pathogenseq/mvcf.py |
sha256=8WgjLJwJpvUfUm1I_PcuDinH7_dFEVIKoP_Ef4aAMyg
|
37349 |
| pathogenseq/phylo.py |
sha256=SMcv2JFjXMQNG7iQHcOu-j0ueH13nfezKaKWNIV17tQ
|
1236 |
| pathogenseq/qc.py |
sha256=sCBIS1gy8uTRRNOUiQEJZlEbO725XqVSHKqDFyTLnGw
|
12414 |
| pathogenseq/utils.py |
sha256=XTRnhM-zkqZgRV7TKk-BRnqR4SrxVX13LdtYTzguK0E
|
7633 |
| pathogenseq/vcf_merge.py |
sha256=66FGkV-5HLbHDzEt9kst13js1GGPpGYzsDtmVAOXJl8
|
3277 |
| pathogenseq-0.1.dev0.data/scripts/Mtb_pipeline.py |
sha256=6od7Rs3WCgF3FELnvGn89ndfGYOCtlon2dYRFG38d-M
|
25550 |
| pathogenseq-0.1.dev0.data/scripts/Mtb_pipeline_no_filt.py |
sha256=wxEzeV-7eILEDduHI55rlAZpKeJsBRRDhssCfwp1Sdo
|
1847 |
| pathogenseq-0.1.dev0.data/scripts/bam2vcf.py |
sha256=N2WAzi0TI7uwAW8C-f4_y4oAHQH4SbVUbntoekFVqIo
|
1648 |
| pathogenseq-0.1.dev0.data/scripts/bam_report.py |
sha256=ytI0vSUP7k_BRr91aqAJk39seyq-CR5037PFFrp4zZM
|
2061 |
| pathogenseq-0.1.dev0.data/scripts/bcf2consensus.py |
sha256=bJnwuuvk3fBkYHLgBgBbN0K2nYadFLX217fzTQfYxP0
|
171 |
| pathogenseq-0.1.dev0.data/scripts/bcf2dist.py |
sha256=2uApe_9DdnGlOa_WJLr1oDjEkVPidyTmWnUdPalqR2U
|
156 |
| pathogenseq-0.1.dev0.data/scripts/bcf2fasta.py |
sha256=yNVcYAWpKcuej6zI3oIZvgMeqKJvcsKoouFkk7lsVpQ
|
261 |
| pathogenseq-0.1.dev0.data/scripts/bcf_sample_stats.py |
sha256=K1qSAJI1DiFb5nO-s5HrMGxzd8L19YxJa6gCOYdvsVs
|
624 |
| pathogenseq-0.1.dev0.data/scripts/collate_json.py |
sha256=k5QV5rCLdr0ZnM5yUvzLF3hxsT-ZWS4o0qcn0PkADao
|
468 |
| pathogenseq-0.1.dev0.data/scripts/combine_dict_list.py |
sha256=qrULHCbsm85zgkn2AJ87JqmELCqXK8pBBF3F_DDDJVg
|
323 |
| pathogenseq-0.1.dev0.data/scripts/cov_plt.py |
sha256=7CO5BettaHlH43I0AAlbXPOrbY8fHJFWwzTiAT9EEGE
|
1086 |
| pathogenseq-0.1.dev0.data/scripts/csv2fasta.py |
sha256=MzR4dYBPfG_n9iPNF8Bzs9Va3gNDSbmw9xH6qgmCOgs
|
231 |
| pathogenseq-0.1.dev0.data/scripts/examl.py |
sha256=onWw3NMYkO3rseQia-e07aHWNK8yia8EiIoNYKslR_c
|
287 |
| pathogenseq-0.1.dev0.data/scripts/extract_dosage.py |
sha256=wViaOt5_nBifdmnDMberdXbyPLW55kv5R-SfjYrn57g
|
140 |
| pathogenseq-0.1.dev0.data/scripts/fasta2vcf.py |
sha256=COJr5xkH964bTr6UOHuNS2MO1FTM3bcEIUzuPpuK5hA
|
251 |
| pathogenseq-0.1.dev0.data/scripts/fastq_report.py |
sha256=FG1A2zSdHlUiSpkpzc6c_m9CMuv9BfYTYKhc5Ql7HVo
|
1149 |
| pathogenseq-0.1.dev0.data/scripts/generate_run_file.py |
sha256=WKCU37ZgSH8rZHig8WzrCGkknJQEU9eTrOyGA5GMVDI
|
2401 |
| pathogenseq-0.1.dev0.data/scripts/illumina_pipeline.py |
sha256=dIzU29Y7F0fD7ci1zk0iqKbFiszkgDkGD-Nf2kDDGq4
|
2467 |
| pathogenseq-0.1.dev0.data/scripts/mapping.py |
sha256=ILa7NQmytrAfyXE9ql3W-XgbhHsy1UAJTWGyf5vbdzc
|
944 |
| pathogenseq-0.1.dev0.data/scripts/merge_vcfs.py |
sha256=YEuvRv3A6Xs5alubBb4GIrOUG0HM4BPGTYVvygZGfFc
|
2651 |
| pathogenseq-0.1.dev0.data/scripts/minION_pipeline.py |
sha256=URqDz0alQMU_vpvzZy7b9NYQx2D1K7_SBiAY2uUBJxA
|
2372 |
| pathogenseq-0.1.dev0.data/scripts/pathogen-profiler.py |
sha256=s9FzHyLQKHncQsvOW_OAlUmYJkV51AqbYQIolW3AVac
|
1725 |
| pathogenseq-0.1.dev0.data/scripts/profiler2tbprofiler.py |
sha256=vLNNlAqxS0dtWT4etBk9_8-6fg7yzubvC9ez7a788fk
|
1181 |
| pathogenseq-0.1.dev0.data/scripts/rename_fq.py |
sha256=bks_jJa1gdVTcttabmE3JN_wQAnmsZblKAEAVIzyAb0
|
300 |
| pathogenseq-0.1.dev0.data/scripts/sambamba_depth.py |
sha256=K12JSQEyvcGCQFnOkcnUuo2w5D7rg7ZwKyt-7-H0okk
|
385 |
| pathogenseq-0.1.dev0.data/scripts/select_reference.py |
sha256=sMCiXNNMvYfMFmlgSKnKSqa3eZSY_Pq0pIm-wahd2U4
|
1172 |
| pathogenseq-0.1.dev0.data/scripts/splitchr.py |
sha256=kq1clK-Xy-ZQSL87YsdqNE9mPst_cNIxuCdD3u5Z0DY
|
710 |
| pathogenseq-0.1.dev0.data/scripts/vcf2itol.py |
sha256=pvz2vqmVDQaQbyIJwAyJxvJLon_JoU6wRXHR0A-N7Dg
|
135 |
| pathogenseq-0.1.dev0.data/scripts/venn_diagram.py |
sha256=Kft2tTQAQJC89s3PyhydwBliD8_rRzCg4uRgXZu9M-I
|
167 |
| pathogenseq-0.1.dev0.dist-info/METADATA |
sha256=Am5aDq7QLgyIX0EyFZfHg-tMsVsKbu_4BF31p5OV_SY
|
203 |
| pathogenseq-0.1.dev0.dist-info/RECORD |
— |
— |
| pathogenseq-0.1.dev0.dist-info/WHEEL |
sha256=9xUnOISuCvrSyfu9GlFZT4i2TZ_2OLkwLNqcDvIo3zM
|
92 |
| pathogenseq-0.1.dev0.dist-info/top_level.txt |
sha256=pBCmTEvZnR5Wi3SjdTfoYtivlhHRPicxglgjJ1zEcRs
|
12 |