Reverse Dependencies of pyhmmer

The following projects have a declared dependency on pyhmmer:

• bakta — Bakta: rapid & standardized annotation of bacterial genomes, MAGs & plasmids
• buscolite — buscolite: busco analysis for gene predictions
• FastAAI — A rapid estimator for amino acid identity between genomes.
• fastaai-preproc — Protein predictions and HMM searches
• fdog — Feature-aware Directed OrtholoG search tool
• hkgfinder — find housekeeping genes in prokaryotic (meta)genomic data
• isotools — Framework for the analysis of long read transcriptome sequencing data
• lXtractor — Feature extraction library for sequences and structures
• mdmparis-defense-finder — Defense Finder: allow for a systematic search of all known anti-phage systems.
• pcalf — Search calcyanin in a set of amino acid sequences
• Pharokka — Fast phage annotation tool
• pytransaln — Translation-guided nucleotide alignment for coding sequences
• tmmpred — Package for predicting Tmm sequences (FMO subfamily with trimethylamine monooxidase activity).