Reverse Dependencies of pynwb

The following projects have a declared dependency on pynwb:

• allensdk — core libraries for the allensdk.
• astroCAST — Package to analyze calcium fluorescence events in astrocytes
• auto-pi-lot — Distributed behavioral experiments
• axel-lab-to-nwb — NWB conversion scripts and tutorials.
• BEP032tools — Checks the validity of a directory with respect to the BEP032 specifications
• bnpm — A library of useful modules for data analysis.
• buffalo-lab-data-to-nwb — A package for converting Buffalo Lab data to the NWB standard
• cagraph — A package to generate graphs from calcium imaging data of neural activity.
• dandi — Command line client for interaction with DANDI archive elements
• eats-worm — Method for extracting GCaMP signal from volumetric imaging recordings
• ecogvis — Timeseries visualizer for Electrocorticography (ECoG) signals stored in NWB files.
• efel — Electrophys Feature Extract Library (eFEL)
• element-animal — DataJoint Element for Animal Management
• element-array-ephys — DataJoint Element for Extracellular Array Electrophysiology
• esi-oephys2nwb — Export binary Open Ephys data to NWB 2.x
• ethome-ml — Machine learning for animal behavior analysis
• expipe-plugin-cinpla — Expipe plugins for the CINPLA lab.
• falcon-challenge — no summary
• filterframework-to-nwb — Convert files from Loren Frank Lab old matlab format to NWB 2.0
• foco-improc — standalone repository for image processing algorithm implementations
• franklab-nwb-extensions — Frank lab nwb specific extensions
• hdmf-zarr — A package defining a Zarr I/O backend for HDMF
• ingesture — Ingest gesturally-structured data into models with multiple export
• ipfx — Intrinsic Physiology Feature Extractor (IPFX) - tool for computing neuronal features from the intracellular electrophysiological recordings
• jaeger-lab-to-nwb — NWB conversion scripts and tutorials.
• jnormcorre — Jax-accelerated implementation of normcorre
• kyutils — kyu's utils
• lincbrain-cli — Command line client for interaction with LINC Brain archive elements
• mease-elabftw — Extracts metadata from eLabFTW experiments
• mesmerize — Calcium imaging analysis platform
• movshon-lab-to-nwb — NWB conversion scripts and tutorials.
• ndx-acquisition-module — NWB extension to add acquisition module
• ndx-bipolar-referencing — An NWB:N extension for storing bipolar referencing schema
• ndx-bipolar-scheme — An NWB extension for storing bipolar scheme
• ndx-dandi-icephys — DandiIcephysMetadata extension.
• ndx-depth-moseq — Extension for MoSeq-extract output
• ndx-dynamic-routing-metadata — Type to store metadata for dynamic routing experiments at Allen Institute
• ndx-ecog — An NWB extension for storing the cortical surface of subjects in ECoG experiments
• ndx-events — NWB extension for storing timestamped event and TTL pulse data
• ndx-extract — NWB extension for storage of parameters and output of EXTRACT pipeline.
• ndx-fllab-novela — NovelaNeurotechnologies Namespaces
• ndx-franklab-novela — NovelaNeurotechnologies Namespaces
• ndx-fret — FRET
• ndx-grayscalevolume — 3D grayscale image.
• ndx-hierarchical-behavioral-data — NWB extensions for storing hierarchical behavioral data
• ndx-ibl — IBL sessions specific metadata
• ndx-ibl-metadata — IBL sessions specific metadata
• ndx-icephys-meta — Implement proposal for hierarchical metadata strucutre for intracellular electrophysiology data
• ndx-labmetadata-abf — LabMetaData extension.
• ndx-labmetadata-giocomo — LabMetaData.
• ndx-lflab-novela — NovelaNeurotechnologies Namespaces
• ndx-miniscope — Represent metadata for Miniscope acquisition system.
• ndx-multichannel-volume — extension to allow use of multichannel volumetric images
• ndx-nirs — An NWB extension for storing Near-Infrared Spectroscopy (NIRS) data
• ndx-odor-metadata — NWB Extension for documenting odor stimulus metadata
• ndx-optogenetics — Representing optogenetics devices and surgeries
• ndx-photometry — extension for fiber photometry data
• ndx-photostim — Holographic photostimulation extension to NWB standard
• ndx-pinto-metadata — The NWB extension for storing ViRMEN experimental metadata for the Pinto lab.
• ndx-point-cloud-table — An extension for storing point clouds in an NWB file
• ndx-pose — NWB extension to store pose estimation data
• ndx-probeinterface — Extension for defining neural probes in the probeinterface format
• ndx-simulation-output — Holds structures for recording data from multiple compartments of multiple neurons in a single TimeSeries
• ndx-sound — Represent acoustic stimuli and responses
• ndx-spectrum — data type for holding power or phase spectra for a signal
• ndx-speech — transcriptions and other speech-related data
• ndx-survey-data — NWB extension for survey/ behavioral data
• ndx-tan-lab-mesh-attributes — Extension for storing attributes of 3D meshes
• ndx-tank-metadata — NWB:N extension for storing metadata for Tank lab
• ndx-turner-metadata — The NWB extension for storing Turner lab specific metadata
• ndx-whisk — NWB extension to store whisker tracking measurements computed with Whisk (Janelia Whisker Tracker) or other video-based whisker tracking methods.
• ndx-zebrafish — NWB extensions for storing (larval) zebrafish expreiment related data
• neo — Neo is a package for representing electrophysiology data in Python, together with support for reading a wide range of neurophysiology file formats
• neuroconv — Convert data from proprietary formats to NWB format.
• nlb-tools — Python tools for participating in Neural Latents Benchmark '21
• np-nwb — Tools for quickly generating `.nwb` files from non-standard Mindscope Neuropixels experiments.
• np-nwb-trials — no summary
• np-tools — General-purpose tools for common tasks encountered in Mindscope Neuropixels workflows.
• npc-sessions — Tools and interfaces for working with behavior and epyhys sessions from the Mindscope Neuropixels team, in the cloud.
• nwb-conversion-tools — Convert data from proprietary formats to NWB format.
• nwb-docutils — Collection of CLIs, scripts and modules useful to generate the NWB documentation
• nwb-web-gui — Web graphical user interface for NWB conversion and exploring
• nwb4fp — Description of my package
• nwb4fprobe — Description of my package
• nwbext-ecog — Convert data to nwb
• nwbext-simulation-output — Extension for storing large-scale simulation output in the Neurodata Without Borders: Neurophysiology format
• nwbinspector — Tool to inspect NWB files for best practices compliance.
• nwbmatic — NWB creator from various data streams
• nwbwidgets — This is nwbwidgets, widgets for viewing the contents of a NWB-file in Jupyter Notebooks using ipywidgets.
• physion — Vision Physiology Software
• process-nwb — ECoG preprocessing scripts for NWB files.
• pynapple — PYthon Neural Analysis Package Pour Laboratoires d’Excellence
• roiextractors — Python module for extracting optical physiology ROIs and traces for various file types and formats
• RutishauserLabtoNWB — Export and Analysis Code for NWB:N
• segmentationextractors — Python module for extracting optical physiology ROIs and traces for various file types and formats
• silverlabnwb — Python tools for working with Silver Lab data in the NWB2 format
• simply-nwb — Common NWB use cases and simplified interface for common usage
• simuran — Simultaneous Multi-region Analysis supported with a network style
• sleap — SLEAP (Social LEAP Estimates Animal Poses) is a deep learning framework for animal pose tracking.
• sleap-io — Standalone utilities for working with pose data from SLEAP and other tools.