Reverse Dependencies of pysam
The following projects have a declared dependency on pysam:
- vcf2pandas — Package to convert a vcf into a pandas dataframe.
- vcf2py — Tools to process genomic variant data with Numerical Python
- vcferr — Probabilistic VCF genotype error simulation
- vcfio — A simple and efficient VCF manipulation package.
- vcfpy2 — Python 3 VCF library, based on vcfpy.
- vembrane — Filter VCF/BCF files with Python expressions.
- vintools — vintools - Michael Vinyard's utilities.
- vireadb — ViReaDB: Viral Read Database
- wgscovplot — Create interactive comparative sequencing coverage plots from virus sequencing data.
- whatshap — phase genomic variants using DNA sequencing reads
- windel — Sliding-window indel correction
- wisestork — Within-sample CNV calling
- XICRA — Small RNAseq pipeline for paired-end reads
- xlavir — Excel report from viral sequencing analysis output
- xron — A deep neural network basecaller for nanopore sequencing.
- XYalign — Command line tools and python library to infer ploidy, correct for sex chromosome complement, and work with NGS data
- yasim — Yet Another SIMulator for Alternative Splicing Events and Realistic Gene Expression Profile
- zither — Command-line tool to pull raw depths and alt freqs from BAM file(s) based on an existing VCF, writing output as new VCF to stdout.
- zorp — ZORP: A helpful GWAS parser
- zzx-deep-genome — A module for constructing parameter initialization matrix of convolutional neural network for genomics using PFM matrix information of transcription factors in Jaspar database.