pysnptools

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0.4.23 pysnptools-0.4.23-py3-none-any.whl

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Project: pysnptools
Version: 0.4.23
Filename: pysnptools-0.4.23-py3-none-any.whl
Download: [link]
Size: 264724
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Uploaded: 2020-09-23 19:58:36 +0000

dist-info

METADATA

Metadata-Version: 2.1
Name: pysnptools
Version: 0.4.23
Summary: PySnpTools
Author: FaST-LMM Team
Author-Email: fastlmm-dev[at]python.org
Home-Page: https://fastlmm.github.io/
Project-Url: Bug Tracker, https://github.com/fastlmm/PySnpTools/issues
Project-Url: Documentation, http://fastlmm.github.io/PySnpTools
Project-Url: Source Code, https://github.com/fastlmm/PySnpTools
License: Apache 2.0
Keywords: gwas bioinformatics sets intervals ranges regions plink genomics file-format reader genotype bed-format writer python snps
Classifier: Programming Language :: Python :: 3.7
Classifier: Programming Language :: Python :: 3.8
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python
Requires-Dist: scipy (>=1.1.0)
Requires-Dist: numpy (>=1.11.3)
Requires-Dist: pandas (>=1.1.1)
Requires-Dist: psutil (>=5.6.3)
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Requires-Dist: dill (>=0.2.9)
Requires-Dist: bgen-reader (>=4.0.6)
Requires-Dist: bed-reader (>=0.1.1)
Description-Content-Type: text/markdown
[Description omitted; length: 5369 characters]

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pysnptools/distreader
pysnptools/kernelreader
pysnptools/kernelstandardizer
pysnptools/pstreader
pysnptools/snpreader
pysnptools/standardizer
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pysnptools/util/mapreduce1
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