Reverse Dependencies of pyvcf

The following projects have a declared dependency on pyvcf:

• ACEBinf — no summary
• aeqtl — eQTL analysis using region-based aggregation of rare variants.
• afplot — Plot allele frequencies in VCF files
• anvage — toolkit to process routine operation on gff3, vcf and fasta files
• b2constsites — Generate an appropriate data tag to add constant sites to your BEAST2 XML
• biometrics — Package to generate sample based biometrics.
• cuteSV — Long-read-based human genomic structural variation detection with cuteSV
• fings — Filters for Next Generation Sequencing
• gretel — An algorithm for recovering potential haplotypes from metagenomes
• gtf2seq — Extract genomic sequences and visualize the genomic features in word document
• gvcf2bed — Convert gVCF into BED
• iCallSV — The module helps to call structural variants using NGS data set on human.
• ICGC-data-parser — Tools to facilitate the parsing of SSM data from the International Cancer Genome Consortium data releases, in particular, the simple somatic mutation aggregates.
• kipoi_veff — kipoi_veff: variant effect prediction plugin for Kipoi
• mendelmd — no summary
• mgkit — Metagenomics Framework
• mitywgs — A sensitive Mitochondrial variant detection pipeline from WGS data
• mutanno — Mutation Annotation Tool
• ngsscriptlibrary — Scripts for NGS data-analysis
• olivar — Olivar pipeline
• PHASEfilter — Software package to filter variants, SNPs and INDELs, that are present in heterozygous form in phased genomes.
• pyvcfannotate — VCF annotation
• RCK — A tool for (R)econstruction of (C)ancer (K)aryotypes (both clone- and haplotype-specific)
• RNA-APoGee — A package for aligning RNA-seq data without reference biases
• ScaleHD — Automated DNA micro-satellite genotyping.
• smashbenchmarking — Check the accuracy of one VCF callset against another
• snpfc — no summary
• superseal — Reference-guided viral quasipsecies reconstruction
• tbvcfreport — Parses SnpEff generated VCF and generates an HTML report.
• vcf2fhir-test-517 — Convert .vcf files to HL7 FHIR standard
• vcf2fhir-test-upgrade-test-upgrade — Convert .vcf files to HL7 FHIR standard
• vcfsynonymous — Detect synonymous genetic variants in VCF
• vcfy — Generate VCF file with random variants from reference genome
• Viola-SV — SV signature analysis tool with custom SV type