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qc-metric-aggregator

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0.1.5 qc_metric_aggregator-0.1.5-py3-none-any.whl

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Project: qc-metric-aggregator
Version: 0.1.5
Filename: qc_metric_aggregator-0.1.5-py3-none-any.whl
Download: [link]
Size: 17709
MD5: 2feb3508ffdfd0851832ab3e4fc0d246
SHA256: dbd6042e65855e142f6843be59e073e64f062d5ba104b68bb3a51f18b2a11942
Uploaded: 2021-04-20 18:40:15 +0000

dist-info

METADATA · WHEEL · RECORD · top_level.txt · entry_points.txt

METADATA

Metadata-Version: 2.1
Name: qc-metric-aggregator
Version: 0.1.5
Summary: Given the output directory of a QC pipeline and a threshold config file, parse out the desired metrics and evalute them against the thresholds.
Author: Adam Coffman
Author-Email: acoffman[at]wustl.edu
Home-Page: https://github.com/genome/qc-metric-aggregator
License: MIT
Classifier: License :: OSI Approved :: MIT License
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.7
Requires-Dist: pyyaml
Description-Content-Type: text/markdown
[Description omitted; length: 4499 characters]

WHEEL

Wheel-Version: 1.0
Generator: bdist_wheel (0.36.2)
Root-Is-Purelib: true
Tag: py3-none-any

RECORD

Path Digest Size
process_metrics/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
process_metrics/__main__.py sha256=ieuAIgxf5Pzf0epqcW9oH5Okby4S06X5dF24D0sijPk 1350
process_metrics/metric_threshold.py sha256=Sj-ZyHXNYw9MSVfyAr2E1eK0TE5OmXGqwzpAldJscso 230
process_metrics/qc_validation_result.py sha256=uKvluCrhg7cHybsX3yG4SdilRDAM-fzPMOdb4rrXaBc 141
process_metrics/qc_validator.py sha256=mU00XkNNdc-HWR0u5C38SOp7JDe4gZdvy_Z1sk5we64 1172
process_metrics/report_generator.py sha256=1JYZgkAzVFHBZ6ljBoztEHluKt9PdCcFnPf781MfXEU 1679
process_metrics/threshold_file_parser.py sha256=vqOxBdwsn7QGSX8GzDYZ3OXxH530pSNd1C6lHEFgR-o 921
process_metrics/metrics/__init__.py sha256=vuDDQiYBN4CZGnD2yUYrqPAaYPN6UQmEM3iMpsVSsyE 75
process_metrics/metrics/available_metrics.py sha256=4_cY_Gq-Q6UDJpwAHmd9-Th50butNaO-WcG4ggRzVOs 1851
process_metrics/metrics/freemix.py sha256=ZJyHXGb35rpLLIY2bVGlKNlPRE5gza9H0MO_4sW7XRM 519
process_metrics/metrics/mean_coverage.py sha256=do3eIkYexfGfgvrkAK01wMVkI3Oc3l0IxqWEvPIMWYo 522
process_metrics/metrics/mean_target_coverage.py sha256=t1fbgwhJeUGbFQ7a1NZgBHRiRTnGxVqIEzd9Xxxd4LQ 530
process_metrics/metrics/median_absolute_deviation.py sha256=S-XFKF2aTsYRiF-UAjGWFNl-e0ffvtv8J26oV199mQI 731
process_metrics/metrics/median_insert_size.py sha256=jBIg8cDBd7MpnbfgK8SdrVu8uPVm6xyEVVUlq9oHK_I 717
process_metrics/metrics/metric.py sha256=ruxByVvdw9-bd8dUEtCQbPD5qul5cMEdKZqrkMF_hkE 345
process_metrics/metrics/percent_10x.py sha256=6O6cmbv6cMeHtbqUpeZAPyFMvfn7XiDofj2NZrUb_p0 514
process_metrics/metrics/percent_20x.py sha256=vsrjBfY4mA9ThKGVZwGWoZwdJm-ML6gVuCfw0JxYJ_s 514
process_metrics/metrics/percent_30x.py sha256=OgNR6A58_lFCVVGEGaQ6PMNDZ2PgDTCAoe4wfbVxLCI 514
process_metrics/metrics/percent_chimeras.py sha256=Y2Eva09Ag4dqVRrRlariyhEtkhGstqhK0g94F1bUwBM 746
process_metrics/metrics/percent_duplication.py sha256=cHjSGfXQ1RzT3SSZathdoIPwJSsRhskVAJnJuWRPTLQ 575
process_metrics/metrics/percent_target_10x.py sha256=s3DoafPtamiG-r9xFQ1IHn0vu4yghwO_42Nk9yqjl5g 528
process_metrics/metrics/percent_target_20x.py sha256=7Bo3G3drjFSg-4BYIaiFMr5mJ6AGl2ddYb_uedXS3iU 528
process_metrics/metrics/percent_target_30x.py sha256=cdJiPb-Sxsgn7McXnLSnIZCgWMMrdUjQgIR1xA08SJI 528
process_metrics/metrics/q20_bases.py sha256=u9LmXWfSMkNF2i9cy12JFUk0orGHovh88bzmTqT7t9I 459
process_metrics/metrics/read1_mismatch_rate.py sha256=Vq_FIKqi7gUiIoJRunhgv4LfnA5WeU4p6HveQJ1YuEQ 758
process_metrics/metrics/read2_mismatch_rate.py sha256=FP15gp5GfITKjphd4UkGfhM44k2qnn3XWpTvW-JEJOE 759
process_metrics/metrics/tsv_metric.py sha256=3vh-2qVQtU0p42q67HzL7kML_vXwdBQJKVLK9ZOzAak 2436
qc_metric_aggregator-0.1.5.dist-info/LICENSE sha256=kUNghD3FXHLg4KooImBTe8XaUpqgxOrkGB_PIukXzew 1052
qc_metric_aggregator-0.1.5.dist-info/METADATA sha256=GP43PG9_SxDElHS9XLhM77pX-ptMwhXOJLVDDB9jOqU 5071
qc_metric_aggregator-0.1.5.dist-info/WHEEL sha256=OqRkF0eY5GHssMorFjlbTIq072vpHpF60fIQA6lS9xA 92
qc_metric_aggregator-0.1.5.dist-info/entry_points.txt sha256=hudIlu7eV2gsahMFxp6rEyuzOmOyQWjJLT66bLCWTp0 83
qc_metric_aggregator-0.1.5.dist-info/top_level.txt sha256=rq5EuYEuCOvOb7SIJRpp27dz9S6pVtYDEe0AhOumWY8 16
qc_metric_aggregator-0.1.5.dist-info/RECORD — —

top_level.txt

process_metrics

entry_points.txt

[console_scripts]
aggregate-qc-metrics = process_metrics.__main__:generate_report