Recentrifuge

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1.14.0 recentrifuge-1.14.0-py3-none-any.whl

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Project: Recentrifuge
Version: 1.14.0
Filename: recentrifuge-1.14.0-py3-none-any.whl
Download: [link]
Size: 604845
MD5: 2d981e9c8ae3039fe6c929e35bdc9c6c
SHA256: 7dcac5eafff6dfde941b21caafe993d4a5ef19fc0ea5dd0cf533481ac43658d1
Uploaded: 2024-02-06 07:35:10 +0000

dist-info

METADATA

Metadata-Version: 2.1
Name: recentrifuge
Version: 1.14.0
Summary: Robust comparative analysis and contamination removal for metagenomics
Author: Jose Manuel Martí
Author-Email: jse.mnl[at]gmail.com
Home-Page: http://www.recentrifuge.org
Project-Url: Documentation, https://github.com/khyox/recentrifuge/wiki
Project-Url: Source, https://github.com/khyox/recentrifuge
Project-Url: Tracker, https://github.com/khyox/recentrifuge/issues
License: AGPL except krona.js, with its own license by BNBI
Keywords: metagenomics comparative-analysis contamination-removal
Classifier: Development Status :: 5 - Production/Stable
Classifier: Environment :: Console
Classifier: Environment :: Web Environment
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: GNU Affero General Public License v3 or later (AGPLv3+)
Classifier: Natural Language :: English
Classifier: Operating System :: OS Independent
Classifier: Programming Language :: JavaScript
Classifier: Programming Language :: Python :: 3.6
Classifier: Programming Language :: Python :: 3.7
Classifier: Programming Language :: Python :: 3.8
Classifier: Programming Language :: Python :: 3.9
Classifier: Programming Language :: Python :: 3.10
Classifier: Programming Language :: Python :: 3.11
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: Topic :: Scientific/Engineering :: Medical Science Apps.
Requires-Python: >=3.6
Requires-Dist: biopython (==1.79)
Requires-Dist: numpy (>=1.19.5)
Requires-Dist: openpyxl (==3.1.2)
Requires-Dist: matplotlib (>=3.3.4)
Requires-Dist: pandas (<2.0.0)
Description-Content-Type: text/markdown
License-File: LICENSE.txt
License-File: COPYING.txt
[Description omitted; length: 2025 characters]

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Tag: py3-none-any

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recentrifuge