sc-dandelion

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0.3.5 sc_dandelion-0.3.5-py3-none-any.whl

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Project: sc-dandelion
Version: 0.3.5
Filename: sc_dandelion-0.3.5-py3-none-any.whl
Download: [link]
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Uploaded: 2024-02-01 04:54:57 +0000

dist-info

METADATA

Metadata-Version: 2.1
Name: sc-dandelion
Version: 0.3.5
Summary: sc-TCR/BCR-seq analysis tool
Author: zktuong
Author-Email: z.tuong[at]uq.edu.au
Home-Page: https://github.com/zktuong/dandelion/
Classifier: Programming Language :: Python :: 3.7
Classifier: Programming Language :: Python :: 3.8
Classifier: Programming Language :: Python :: 3.9
Classifier: Programming Language :: Python :: 3.10
Classifier: License :: OSI Approved :: GNU Affero General Public License v3 or later (AGPLv3+)
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License-File: LICENSE
[Description omitted; length: 6356 characters]

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dandelion
tests