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sc2ts

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0.0.3 sc2ts-0.0.3-py3-none-any.whl

Wheel Details

Project: sc2ts
Version: 0.0.3
Filename: sc2ts-0.0.3-py3-none-any.whl
Download: [link]
Size: 67447
MD5: 26270ba7e023117118d4eead95018184
SHA256: c19096bd14260ba6b619896265783d7115155f83c2e3a82d8b88fc8d10e4e9c0
Uploaded: 2023-05-31 14:01:33 +0000

dist-info

METADATA · WHEEL · RECORD · top_level.txt

METADATA

Metadata-Version: 2.1
Name: sc2ts
Version: 0.0.3
Summary: Infer a succinct tree sequence from SARS-CoV-2 sequence alignments
Author: Jerome Kelleher
Author-Email: jerome.kelleher[at]bdi.ox.ac.uk
License: MIT
Requires-Python: >=3.7
Requires-Dist: tskit (>=0.5.3)
Requires-Dist: tszip
Requires-Dist: tsinfer (>=0.3.0)
Requires-Dist: setuptools (>=41.2)
Requires-Dist: numba
Requires-Dist: pandas
Requires-Dist: tqdm
Requires-Dist: pyfaidx
Requires-Dist: scipy
Requires-Dist: click
Requires-Dist: matplotlib; extra == "analysis"
Requires-Dist: scikit-learn; extra == "analysis"
Requires-Dist: pandas; extra == "analysis"
Requires-Dist: IPython; extra == "analysis"
Requires-Dist: networkx; extra == "analysis"
Requires-Dist: setuptools (>=41.2); extra == "setup_requires"
Requires-Dist: setuptools-scm; extra == "setup_requires"
Provides-Extra: analysis
Provides-Extra: setup_requires
Description-Content-Type: text/markdown
License-File: LICENSE
[Description omitted; length: 3477 characters]

WHEEL

Wheel-Version: 1.0
Generator: bdist_wheel (0.40.0)
Root-Is-Purelib: true
Tag: py3-none-any

RECORD

Path Digest Size
sc2ts/__init__.py sha256=5xwsJlZooxkFj0levbX4Bwu3J9q1LaTHhEIA-03fjw4 192
sc2ts/__main__.py sha256=BPTV8ydtv6kTtkFNDcHpqDiO3--p3T8BpFfAjVskteU 61
sc2ts/_version.py sha256=ecxYgYmVW6voOj3t8NqL_62765FAcc-gUSyum7oXnIg 160
sc2ts/alignments.py sha256=ZyinbhyGZZUAwbxCDg4bqi7IyOu-pmzo1ezxQgYcnKc 5754
sc2ts/buildtree.py sha256=daEdpEyAJIa8b2VkCqSKcw8PaExcB6Qro80XNes_sHA 2
sc2ts/cli.py sha256=dl_dLr6NVIWNl4s-A3debvbxz6pmOsBkmwoxav-Ed8o 11116
sc2ts/core.py sha256=ilPXTeiDAvpBCET_OIdI5sqXPaexJYFyTCJ68IE1MvA 1709
sc2ts/inference.py sha256=KPJhaJxaSY0wahVT4zMN1_NDvA3ILrg95nzya1NL5jc 47527
sc2ts/lineages.py sha256=v1LC3M90IUKNikRwXkeakvl322mpNbq5j2z9Di3ic2U 17354
sc2ts/local_tree.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
sc2ts/metadata.py sha256=DWb1T1BSyOGtbBZ4bhkaqAvqYvuJzQoQSXU-WTTFEcI 2373
sc2ts/nextstrain.py sha256=nyYbEMb2kiFNeN04bdTF3QGajGXiLaUCnGQf65_tLOo 19342
sc2ts/utils.py sha256=T5qNO-jKFrJfV354abjju9CuI-j6uyLnNi4fFfbI8qU 83538
sc2ts/data/annotation.csv sha256=8ay-F8-a4sQdMCx2JDn34y-mdm872UES5_Z3iGO4ce0 194
sc2ts/data/problematic_sites.txt sha256=z1UfBa_zrujuGgVnVEBxvxQ0tvqMMiTRJlhB6wTexes 2589
sc2ts/data/reference.fasta sha256=OUuVALn4CoR_X-jTDkcCJADY4b-s5Wcht1NnrNPFtpw 30430
sc2ts-0.0.3.dist-info/LICENSE sha256=8T47jHbzHqY9Ma3zNtOmBz0UfsA-Lbwx3xX1JG4XnXE 1072
sc2ts-0.0.3.dist-info/METADATA sha256=YZUN-9kiszyjUPiY2Va5n37gAz9JeV_vhMPk_BhhISU 4426
sc2ts-0.0.3.dist-info/WHEEL sha256=pkctZYzUS4AYVn6dJ-7367OJZivF2e8RA9b_ZBjif18 92
sc2ts-0.0.3.dist-info/top_level.txt sha256=Ed0V5Ifksj5obzT9y_RWvJQ5vW6PYEdK7ZYyD8iN5-0 6
sc2ts-0.0.3.dist-info/RECORD — —

top_level.txt

sc2ts