scgenome

View on PyPIReverse Dependencies (0)

0.0.19 scgenome-0.0.19-py2.py3-none-any.whl

Wheel Details

Project: scgenome
Version: 0.0.19
Filename: scgenome-0.0.19-py2.py3-none-any.whl
Download: [link]
Size: 2560273
MD5: 802b533cf78eacbd65ce20d8ebb59c69
SHA256: 0de70d25cddd9b41a92a95b6d474714b309a95f6a08bc05a39b3a04426dd5a76
Uploaded: 2024-03-06 21:26:32 +0000

dist-info

METADATA

Metadata-Version: 2.1
Name: scgenome
Version: 0.0.19
Summary: Code for analyzing single cell whole genomes
Author: Shah Lab
Home-Page: https://github.com/shahcompbio/scgenome
Requires-Dist: adjustText
Requires-Dist: anndata
Requires-Dist: bamread
Requires-Dist: biopython
Requires-Dist: bokeh
Requires-Dist: brewer2mpl
Requires-Dist: Click
Requires-Dist: csverve (>=0.3.1)
Requires-Dist: hdbscan
Requires-Dist: hmmlearn
Requires-Dist: ipython (!=8.7.0)
Requires-Dist: jupyter
Requires-Dist: lda
Requires-Dist: matplotlib
Requires-Dist: nose
Requires-Dist: numba
Requires-Dist: numexpr
Requires-Dist: numpy (==1.23)
Requires-Dist: oauthlib
Requires-Dist: pandas
Requires-Dist: pyBigWig
Requires-Dist: pyfaidx
Requires-Dist: pyranges
Requires-Dist: pysam (==0.19)
Requires-Dist: PyYAML
Requires-Dist: scikit-learn
Requires-Dist: scipy
Requires-Dist: seaborn
Requires-Dist: statsmodels
Requires-Dist: umap-learn
Requires-Dist: wgs-analysis
Requires-Dist: pypeliner
Requires-Dist: joblib (==1.1.1)
Requires-Dist: sphinx (==5.1.1)
Requires-Dist: requests (==2.28)
[No description]

WHEEL

Wheel-Version: 1.0
Generator: bdist_wheel (0.42.0)
Root-Is-Purelib: true
Tag: py2-none-any
Tag: py3-none-any

RECORD

Path Digest Size
scgenome/__init__.py sha256=3PaGGYx41Ht6XgqQ89mDCXcjiBh2544_NbIGtFscDF4 407
scgenome/_version.py sha256=sOimieXUJwUHO1oft9OEc6hQ-ngl7loR1Cmjjim5nmU 498
scgenome/cncluster.py sha256=3JgXSOyx7JrvkAIGBZXW78TBWwjTyC7RrSm5GsGcT2s 1183
scgenome/cnplot.py sha256=Ob0pHtmQ3MBLxK5Qd3fHx2NoCLjWhfCg03n9XqeV8fQ 5347
scgenome/refgenome.py sha256=Kb-t1rrI400TjO5OnT7Ev1SaBp_Kw1xzIX2ui7iReYk 3652
scgenome/utils.py sha256=Pw4JoV3-Xuq6bHONoMmMlv0ZRN0Mkxx4t3qkS6uLHRE 2610
scgenome/data/grch38.fa.fai sha256=yz0BPw5-NQU75bgzkBna7Zrzhy8AcuXhj8AAUuSvWLM 790
scgenome/data/grch38_cytoBand.txt.gz sha256=nKFHzmsCX1WHJ5QaJ4VWu-sVgZXJs0EqyyZnJUN2LXM 12118
scgenome/data/hg19.fa.fai sha256=gaymKSN23FxrrdTUyw86KtMbIda37P9V8nvJD_l4rQo 2746
scgenome/data/hg19_cytoBand.txt.gz sha256=-bgjCbK8oeudkaXLLGqgUoNRFY5uILUdgsyjbQFzXLo 6609
scgenome/data/mm10.fa.fai sha256=iCaOItUfcKJOctDh_UlTIyif6oz_1ewmMdEXS_gRt0U 2139
scgenome/data/mm10_cytoBand.txt.gz sha256=MFE3KK0q_FD8deC6HUjlYCxJHVtzE1BbtcXiqcZ70uU 4155
scgenome/datasets/__init__.py sha256=zjOzmTQNrRq5A9ZIk3eOy_j7haT_C6wSTlIZbdn4OSA 83
scgenome/datasets/_datasets.py sha256=EG4ue5h6-ZEgmh5p_CN60c42lE_cFd9-mbZDfa7IGJs 717
scgenome/datasets/data/OV2295_HMMCopy_reduced.h5ad sha256=zZDaImKTAe3LPReZbaWAXQnEdLfXuNaE14sZWTSvQEY 4948518
scgenome/datasets/data/OV_051_Medicc2_reduced.h5ad sha256=w3I4fLumHHvMXTa46yy7JtXyCf_aA_Rp3xrYfJUk-wk 246320
scgenome/plotting/__init__.py sha256=IeorG_5BcpKE0wJAPribObbFGowTIXQva0nhi4y2Zyk 208
scgenome/plotting/cn.py sha256=TjE7rMKrjaaBzURFc8pWfHH9w-1BdNOo7ffqXYNe5WE 8511
scgenome/plotting/cn_colors.py sha256=ie_Dwk3xFwhTD1MqHBbgx-C61-n1lQ6sPISxRS_cNek 2116
scgenome/plotting/heatmap.py sha256=A43ujrYYR4LeyjuSzA6LUUB0-l6YAyEbtG0tMb806CU 17743
scgenome/plotting/phylo.py sha256=zkMFtGnwDJFmjEd5QR0xcp9341embGCZ8GUL8eTG85A 4291
scgenome/plotting/qc.py sha256=xnIG2lyesSXpZ5oMcNj0Qr1uhlHMyrF9oNVIiM0_lYU 564
scgenome/preprocessing/__init__.py sha256=958Sae62dZLTT5C7eVUNs_1Jzw1QVu6u3V7uD2uDt8Q 242
scgenome/preprocessing/filtering.py sha256=N5qPi2hgFFhe-UrDtyFbRPceYETw1Vbiz-glt8llUQk 4089
scgenome/preprocessing/load_cn.py sha256=NoYAtNrLi1bwfIEcnGohxwOJTn7Ik1NzkaS79C3tgIc 10019
scgenome/preprocessing/load_snv.py sha256=vABMmjiGBEMF4BpDJbU6HLZuUCgtNU1Zl-0PvpUudZY 1820
scgenome/preprocessing/transform.py sha256=L9MF6hBHsm3xGzWIkWzFEfrEKxc4n3sTXhaP78DhFgk 828
scgenome/tests/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
scgenome/tests/test_imports.py sha256=78TkH70fkwFUUJW7izyIynNLbjhVpao8QdNw55xGER0 1917
scgenome/tools/__init__.py sha256=hl2oF_Jxr77OPflmgfm1fdEMhnb9YiX4NomIEDnrNAs 563
scgenome/tools/binfeat.py sha256=chSPT2hafreffzyZfQg--HeR16KVaTx8shxlJ9B5qmE 4092
scgenome/tools/cluster.py sha256=Xexq1PvBBzYsj85dlUYnbrqnu004EqXsHidMAW1wXw4 10751
scgenome/tools/cntransitions.py sha256=r0c0OJ8chc8Vx0buasPNnKXRFbOq-IVLAOhD2oJBOVw 3884
scgenome/tools/concat.py sha256=8cnDC-L-scLf1zilm7NKTiLgl5uZbW8GRJqG3ZMCZDw 597
scgenome/tools/genes.py sha256=vAQrc8Z7brfnvWQVdN4icNMaTaWtNnPUWlBF5a4DkPk 3751
scgenome/tools/getters.py sha256=pezlkxKbcKTbO4HEPKwxmaoEZDSHlOdEpzIn418Qbg4 2746
scgenome/tools/pca.py sha256=AxSSBSjzhyNYEHVS7xSlX9k4qqwkQwy9WZuz5SdqzU4 2472
scgenome/tools/phylo.py sha256=vR3K5prdYfvu6t-b0GUaJcMTRRnf4se6Zp4LEn4HKh8 699
scgenome/tools/ranges.py sha256=9PhRGdHtqNTqWQiXkQwWO_4tfa6ZqidjZwbc09NhNtY 8963
scgenome/tools/sorting.py sha256=OIMxwd_5kMDWqUpoYjiFqLKbofawaxgajflnvi78gpM 4153
scgenome-0.0.19.dist-info/METADATA sha256=5777Cmq6_BT3P_u5azSovN_0mrp76-ZDz6V7jkdOutM 1046
scgenome-0.0.19.dist-info/WHEEL sha256=-G_t0oGuE7UD0DrSpVZnq1hHMBV9DD2XkS5v7XpmTnk 110
scgenome-0.0.19.dist-info/top_level.txt sha256=_wfU9y4DuSgXRMFhLyIIRH-WiYmv2KoTy9wFL8rvifI 9
scgenome-0.0.19.dist-info/RECORD

top_level.txt

scgenome