scvi-tools

View on PyPIReverse Dependencies (4)

0.14.3 scvi_tools-0.14.3-py3-none-any.whl

Wheel Details

Project: scvi-tools
Version: 0.14.3
Filename: scvi_tools-0.14.3-py3-none-any.whl
Download: [link]
Size: 231421
MD5: baf04340860ab3773f382c883a06397e
SHA256: ab48e0c3b8146dae828a2a722ae1d8d98fdc1ee26f1a287e43d939be197ccd6e
Uploaded: 2021-10-22 17:32:41 +0000

dist-info

METADATA

Metadata-Version: 2.1
Name: scvi-tools
Version: 0.14.3
Summary: Deep probabilistic analysis of single-cell omics data.
Author: Romain Lopez
Author-Email: romain_lopez[at]gmail.com
Home-Page: https://github.com/YosefLab/scvi-tools
Project-Url: Documentation, https://scvi-tools.org
License: BSD-3-Clause
Classifier: Development Status :: 4 - Beta
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: BSD License
Classifier: Natural Language :: English
Classifier: Operating System :: MacOS :: MacOS X
Classifier: Operating System :: Microsoft :: Windows
Classifier: Operating System :: POSIX :: Linux
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.7
Classifier: Programming Language :: Python :: 3.8
Classifier: Programming Language :: Python :: 3.9
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Requires-Python: >=3.7,<4.0
Requires-Dist: anndata (>=0.7.5)
Requires-Dist: black (>=20.8b1); extra == "dev"
Requires-Dist: codecov (>=2.0.8); extra == "dev"
Requires-Dist: docrep (>=0.3.2)
Requires-Dist: flake8 (>=3.7.7); extra == "dev"
Requires-Dist: h5py (>=2.9.0)
Requires-Dist: importlib-metadata (<2.0,>=1.0); python_version < "3.8"
Requires-Dist: ipython (>=7.20); python_version >= "3.7" and extra == "docs"
Requires-Dist: ipywidgets
Requires-Dist: isort (>=5.7); extra == "dev"
Requires-Dist: jupyter (>=1.0); extra == "dev"
Requires-Dist: leidenalg; extra == "tutorials"
Requires-Dist: loompy (>=3.0.6); extra == "dev" or extra == "tutorials"
Requires-Dist: nbconvert (>=5.4.0); extra == "dev"
Requires-Dist: nbformat (>=4.4.0); extra == "dev"
Requires-Dist: nbsphinx-link; extra == "docs"
Requires-Dist: nbsphinx; extra == "docs"
Requires-Dist: numba (>=0.41.0)
Requires-Dist: numpy (>=1.17.0)
Requires-Dist: openpyxl (>=3.0)
Requires-Dist: pandas (>=1.0)
Requires-Dist: pre-commit (>=2.7.1); extra == "dev"
Requires-Dist: pydata-sphinx-theme (>=0.4.3); extra == "docs"
Requires-Dist: pyro-ppl (>=1.6.0)
Requires-Dist: pytest (>=4.4); extra == "dev"
Requires-Dist: python-igraph; extra == "tutorials"
Requires-Dist: pytorch-lightning (<1.4,>=1.3)
Requires-Dist: rich (>=9.1.0)
Requires-Dist: scanpy (>=1.6); extra == "dev" or extra == "tutorials"
Requires-Dist: scanpydoc (>=0.5); extra == "docs"
Requires-Dist: scikit-learn (>=0.21.2)
Requires-Dist: scikit-misc (>=0.1.3); extra == "tutorials"
Requires-Dist: sphinx (>=3.4); extra == "docs"
Requires-Dist: sphinx-autodoc-typehints; extra == "docs"
Requires-Dist: sphinx-gallery (>0.6); extra == "docs"
Requires-Dist: sphinx-panels; extra == "docs"
Requires-Dist: sphinx-tabs; extra == "docs"
Requires-Dist: sphinx_copybutton (<=0.3.1); extra == "docs"
Requires-Dist: torch (>=1.8.0)
Requires-Dist: tqdm (>=4.56.0)
Requires-Dist: typing_extensions; python_version < "3.8" and extra == "docs"
Provides-Extra: dev
Provides-Extra: docs
Provides-Extra: tutorials
Description-Content-Type: text/markdown
[Description omitted; length: 5932 characters]

WHEEL

Wheel-Version: 1.0
Generator: poetry 1.0.0
Root-Is-Purelib: true
Tag: py3-none-any

RECORD

Path Digest Size
scvi/__init__.py sha256=QyARQJu_lzBrrkQ6X1ERptztQwNxnQYqB1zgdOu1gTk 779
scvi/_compat.py sha256=5c7_RZ7UzkCS5nTQHFNUoAWVgNqCBmJqtdh8By57KVo 439
scvi/_constants.py sha256=vbFQF3WS9_Prru_UwawcGzSWPoEL7KEGDZTtjFcqvGo 305
scvi/_settings.py sha256=AIaJQeLJtBTP0_e1_C8dNl9fe3kVXQoMeofHbScl_pU 5860
scvi/_utils.py sha256=gOos9rFz0hHAGrklGwFk2BH9m1s9Eq1j4O3bTW57O6s 302
scvi/data/__init__.py sha256=eSboWqNArnXOgpUj2EAP7vG1OGqVo5F-mSpyqL2-hyw 1646
scvi/data/_anndata.py sha256=vU-PythR3HB3YYUuHjyGBPGBiaMvt79WQyaPPYWXoZg 43880
scvi/data/_built_in_data/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
scvi/data/_built_in_data/_brain_large.py sha256=d79T3MtwSBhC-RlW3kM-04M0uqeDlTYACpl2eILNpDU 4507
scvi/data/_built_in_data/_cite_seq.py sha256=9UozyJylUyxJKZUw3XyAjmcbhNsXp6XFj2DDAxWAAu0 7901
scvi/data/_built_in_data/_cortex.py sha256=UpuD5ZSZ1kGzzDDFOjjpWGVwkWi53agT9eAjC5lRGN4 2137
scvi/data/_built_in_data/_csv.py sha256=2hrcYacH6Sj91BhklPY64IyxkiBjePhy_ATgh8CTtLM 1991
scvi/data/_built_in_data/_dataset_10x.py sha256=sTWuGTFablv39X9qWui5Vl8yjzu174Zh4wFtpHBJuis 5789
scvi/data/_built_in_data/_download.py sha256=ykVx8wyoHlwkoXe0-jM02JaIP_n56z2WW1RPs-kK6tk 1426
scvi/data/_built_in_data/_heartcellatlas.py sha256=cIqMjMtCqYanotIIk6TwzgB4xXNXAHgR9nMTXy1rfsQ 1713
scvi/data/_built_in_data/_loom.py sha256=PJ2fhLer5USChbva5YqLSGMDt5ePddj2vM4Z0NA_Bms 5778
scvi/data/_built_in_data/_pbmc.py sha256=aI3hgMua-KVyAP_qNmOSVwxGR2AcyiXlbP-Naafw1u0 4380
scvi/data/_built_in_data/_seqfish.py sha256=awaoLXmqISq8N2WNI82DMoZhp03cHALLX502oOnikt8 3550
scvi/data/_built_in_data/_smfish.py sha256=EvLkI0fQKGbIFOzrsIznstjjApfKokNdootWA_EfVxg 3438
scvi/data/_built_in_data/_synthetic.py sha256=nj-yMa0FEYxaRu_9WrnQK5-IUZrv_oZ5TAkjgCn_P2g 1449
scvi/data/_datasets.py sha256=2lYILSeveItYRXdOPnlCq0-ZbZD-azY_IQ7PKUvo-Bo 23153
scvi/data/_preprocessing.py sha256=F_V_s-3RcKQKMRI1c2bzgW08016YgRtq5_6WhI3tkWQ 12897
scvi/data/_read.py sha256=AAfeHSslENzcfE41LLVCND13EqWghaGZFKKYnWgo3p4 2274
scvi/data/_utils.py sha256=Tr8SWfr5vNRN9MMDMEUaSPvtutAv4Yr9TwWi21Onzdw 2024
scvi/dataloaders/__init__.py sha256=iivNeu44MiTjODTvEHe4ki6RCHhQYl08adR61JANkZo 507
scvi/dataloaders/_ann_dataloader.py sha256=e7nxBuIpPPoxl6nt-mQ6HtXMifUF7jAaRktxF1fPo6I 4954
scvi/dataloaders/_anntorchdataset.py sha256=K5C09plpx65aYeEBt5nWxqZIUg1xnA1fFall2aJ8eY8 4561
scvi/dataloaders/_concat_dataloader.py sha256=VYoaLFjl3SwWfDfoMr5asSSO1_dZImFWM51y0_kqsFM 2396
scvi/dataloaders/_data_splitting.py sha256=UPad0JxdXMYjnQ5FqNOJ6zTXymBfRDk2f7tUUFYSBOA 15172
scvi/dataloaders/_semi_dataloader.py sha256=FRvL8TMYvjUapLoqVt1xpOdZK65FjITeBLeYTaoA_dc 3674
scvi/distributions/__init__.py sha256=PxCoEFk9NCkte6x4KVkF6zncJpRlP3djnf1ayY4uz3Y 227
scvi/distributions/_negative_binomial.py sha256=O_gKjKTAOGy3vXQfe3NCVql66aoBL4yUZE3SbvriAOc 16964
scvi/external/__init__.py sha256=X1SdGvRxy79erdpOLHIiBffbdfsuldyIStK90fQDOXA 226
scvi/external/cellassign/__init__.py sha256=oNQiVHa01gfVFpXzq8uPUAci9t6cAJCcdeeCdaW4BRU 115
scvi/external/cellassign/_model.py sha256=MihpWhhn0PLX1lj4_VdtkHZmGjTrkezGsBOGJWXpzYo 9522
scvi/external/cellassign/_module.py sha256=IhHMyCBSf335gbTWLyaMcFvNoUDox-BReNumebChTJY 8725
scvi/external/gimvi/__init__.py sha256=r_ginqPwZ4hAYMVPamvo4V02IAGKxv7pHlpTCF_GdU0 81
scvi/external/gimvi/_model.py sha256=tcuExrHkOm6GGQT66hYfJWUuRrb5ExWorS5ZA4aKoYg 20396
scvi/external/gimvi/_module.py sha256=fG93p-yIaYM43Wm3Md1gY-O7uvSpLXyMT0z_dYx9KbM 17006
scvi/external/gimvi/_task.py sha256=de9sd1yQx_jKyu2iiQZSO9DzBAqYTI0WZN20l_SeZl4 4972
scvi/external/solo/__init__.py sha256=GpZLAMaTnzTMPB5FV_bFNbY9lmxX7pnur8Col426jhY 45
scvi/external/solo/_model.py sha256=hXicLIHNPlyzIOdJyI6X7yWa-YJqLMFYbwKosRk3kjQ 14588
scvi/external/stereoscope/__init__.py sha256=P-rW6DYe_qm8--U0IrWRsRXeKYmI6lH90T7BbXcEaYw 183
scvi/external/stereoscope/_model.py sha256=Z2s77W3-hsR2DDSa34Wxor9UaJOnX2XgXsF-VUIZkKM 11308
scvi/external/stereoscope/_module.py sha256=q9xjv0oWM_qc02FmJylG5hP2E1Di9RiCIaYGCFey6tA 8672
scvi/model/__init__.py sha256=2JzJi-hdqKTDT9XXleeJUtUYCrAg_UWOXdosSNztTH4 472
scvi/model/_amortizedlda.py sha256=an91tjSggf6AstRgafoknCp0G5ARZ6lM53fS8-vVvQ0 8628
scvi/model/_autozi.py sha256=9o555rBXSAMlcw0TpxjdcOpAITeKh8QIdVA8Hdce4sA 11462
scvi/model/_condscvi.py sha256=8cyCLLVWmNTmU6xZL65gQc6ksyGHfO0um1F5udDDlPE 7560
scvi/model/_destvi.py sha256=n2WSZfSWI-PuRGbKdx6X7LhxNcf8Q3-SMCc3q8SYGMs 12915
scvi/model/_linear_scvi.py sha256=mS4efySBdKo0IjBLqOU7BrbFlJ1l0sm8yza2a0EdJQg 4998
scvi/model/_metrics.py sha256=I0MIexm6BYLrTq16F4WTn7sOoE6slslUCzubI4Q4yCI 4320
scvi/model/_multivi.py sha256=FMghhaCIGwDUTq6pQDGa_8mzr3LBFA-XYrmZotUMMeU 32351
scvi/model/_peakvi.py sha256=KYwA0XZbE9PYXTe7hEpOwsurSIfGV-J_4XAB-KAGicQ 20834
scvi/model/_scanvi.py sha256=bM0A1CbG7zGP4k7MhZUcTio00eUhiVz2kPjFDuEwlUk 15075
scvi/model/_scvi.py sha256=u1S6KYj8wzl73spgURSPQUNwj4MfXnZWWOLHiw63Rw4 5405
scvi/model/_totalvi.py sha256=pFS8zBBo4CyWIrjAWOvuUAD5nDlvrxKvBl4PuQHK-Ts 45404
scvi/model/_utils.py sha256=onS10MfZHaxEbAsJGAfLd0dllna4PHBIk7Zi6cLsKLA 9440
scvi/model/base/__init__.py sha256=ZyxHFxex7e2pqHZqBDP5gQ6kvm09p4gx68JUPzxwyL4 477
scvi/model/base/_archesmixin.py sha256=rmi2FUA9OR6uNsAY0aoEfphpOlz0JgsFbbR-7OykjcY 7649
scvi/model/base/_base_model.py sha256=N7z5JFrLCDMNMfEaNKOx_ry_5MPrj83pAnt__J32V6c 14091
scvi/model/base/_differential.py sha256=gsx0kD5KGfXox7YxSqB3Dwp3QkM_COmWi5jeB88AwjI 26199
scvi/model/base/_log_likelihood.py sha256=6qjgFfsxaJXtpN4YDyQzIZwVRdmq88wIJ41uO2fXBfI 1894
scvi/model/base/_pyromixin.py sha256=xbslhaKnNY7xnHCKH6EihnGmx-6i8yy3mq6MyzGD0OQ 18352
scvi/model/base/_rnamixin.py sha256=HS-dJco2mShzzSwdPXl-gUVVMk4okml1D0OG4TAsamQ 20717
scvi/model/base/_training_mixin.py sha256=VgSRcdIG6gyHySYr98y7Zl7UdF_4E4s40-8FieIWjt8 2742
scvi/model/base/_utils.py sha256=nMF2JennThNiwtff8fMGlk-3qWBI3GIAsFBtx8seXm0 7623
scvi/model/base/_vaemixin.py sha256=_PnZyemCZ1CgicNDgwDDnWDLgg7tKMJXiuTp3LiAo1k 6469
scvi/module/__init__.py sha256=XR3nTn8bwCwmIvwjQ4oyesNlz6iEgOK3BbvxGgh5Y_M 523
scvi/module/_amortizedlda.py sha256=BGVh3k-MaKhatb2MRIOCeos2niaHUaxv0e7S4r4DRZI 12274
scvi/module/_autozivae.py sha256=YCwda_wuCOpjos4YbH3S1C8r_lf0oKz8RekFlMndy3o 15890
scvi/module/_classifier.py sha256=VIu-ijKE64LrnL5G86om3o3DvjCn_GBhtxYcRAa_3wA 1646
scvi/module/_mrdeconv.py sha256=cIdo3E0qaO5UuP_uq_bSVEVD8ihs9QqJv3K45jUw-FY 12284
scvi/module/_multivae.py sha256=pg1cujOPKmjF6T9LtDApWzWvmYinwKqL0Bf_Qh1Mf4Q 20543
scvi/module/_peakvae.py sha256=AiDDFDJEwHZGnnE9S1NFGbwe2u_LSbES8otGOcs-5o0 11786
scvi/module/_scanvae.py sha256=zPkMl-VBUMjGhrbMX-S37jkEPBwK6XlwGuUFrChUxlY 11587
scvi/module/_totalvae.py sha256=OqKs_qu9o7wTqdFMftFQqZ680qFRaxhUnvvD5p4Payw 28289
scvi/module/_utils.py sha256=Gvrtuy1oGvemd1mxgNbvJVvatX534PmqsJ5Mu2ulPow 1270
scvi/module/_vae.py sha256=AMrGNg-wb-W3KwesAApZnF3phriD0IYkZpbysAnbrDc 24034
scvi/module/_vaec.py sha256=97qsu9aQwj01KWVrP5J62ZztLpUWKzogJSD3WLKBVXw 6813
scvi/module/base/__init__.py sha256=VN8mniXTra4Vl-8blrkZ6B70GojF1mPh_OT6SPcn6y8 205
scvi/module/base/_base_module.py sha256=M5yDnELHustp00L0YAeLOdD0toY9xpuWjRhafVRmOBU 12166
scvi/module/base/_decorators.py sha256=HsXS1O03ILEn91gaGj5wE7F98QS_4sw2pQiInYAM0L4 3726
scvi/module/base/_pyro.py sha256=12avOT21-5mOKUYRKR1HNeGAzIElnc3nMyTJbua9gQI 227
scvi/nn/__init__.py sha256=UhV823mdWRLJuOS6YayHC71i-Y9pwc8ON26_-owdTgI 422
scvi/nn/_base_components.py sha256=wTaBO3SI_hfJausg9cElvfZ683VS1csw5Mmj1gS-aqc 33532
scvi/nn/_utils.py sha256=ZIqyl0Uzk-RZV4hv0DBlyIIQGxJ7xZmOpjpuwyBCOg4 275
scvi/train/__init__.py sha256=OARHgfbpo4GwjMZzBXkWrL7sieCszxUpvcVkha_XvCI 484
scvi/train/_callbacks.py sha256=zPZIk6J-SaS8yJ2hnXWM4cMQJEzSzo1RlGanafaniFg 4619
scvi/train/_logger.py sha256=OFTrFREKSIGmLZOv8scuzA6vcjS_nTqkK1GjYhqnlXM 1588
scvi/train/_progress.py sha256=x6DGX023yYP3YFr5kGUh9bcV9pRLpJJo3OqV-n5Lgjk 3147
scvi/train/_trainer.py sha256=UbGJM0V1C1rQusR9IGoYcDb79sFXXgANsaD_JLeETdg 7521
scvi/train/_trainingplans.py sha256=Wu-Z7U2V0xR2_WcaKuEyuFx44jPER0spDWD1Jrv82Zs 30454
scvi/train/_trainrunner.py sha256=_nMBX2YTNKRbFyzldq0hP2-o6bTBwh0O1Xk3dJR4rDk 4252
scvi/utils/__init__.py sha256=ChkC8ms6IQr1kNPMoHS6DQKEP7DlaQ2GYh0FumKWc5M 111
scvi/utils/_docstrings.py sha256=S_US1qc-zIWcGl5tN5L2IzBrsMvyB0EGnmuTdmRVupU 4877
scvi/utils/_track.py sha256=nP7FkDmcicir_N981GUvKfdnvrEc7upzIYnEvL3vXKE 1744
scvi_tools-0.14.3.dist-info/LICENSE sha256=Y2-XHxpQ5KKIdsXQjYZ7oXEye9VkG1zJ47iwMMwNAWI 1547
scvi_tools-0.14.3.dist-info/WHEEL sha256=SrtnPGVTMeYWttls9xnWA01eUhCZ3ufFdJUYb1J3r-U 83
scvi_tools-0.14.3.dist-info/METADATA sha256=Qi5JqoOquJPp25jTgJUNAH6hl3soTpdeG3kfTygNFmQ 8895
scvi_tools-0.14.3.dist-info/RECORD