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SigProfilerExtractor

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1.1.23 SigProfilerExtractor-1.1.23-py3-none-any.whl

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Project: SigProfilerExtractor
Version: 1.1.23
Filename: SigProfilerExtractor-1.1.23-py3-none-any.whl
Download: [link]
Size: 504859
MD5: edd2236020e76a7a92f98ee46c54be12
SHA256: 9f43e1de8766d2409f7fa0eebf6fac4149254821c23f79769d80ad6da1dba23b
Uploaded: 2023-11-21 01:39:54 +0000

dist-info

METADATA · WHEEL · RECORD · top_level.txt

METADATA

Metadata-Version: 2.1
Name: SigProfilerExtractor
Version: 1.1.23
Summary: Extracts mutational signatures from mutational catalogues
Author: S Mishu Ashiqul Islam
Author-Email: m0islam[at]ucsd.edu
Home-Page: https://github.com/AlexandrovLab/SigProfilerExtractor.git
License: UCSD
Requires-Dist: scipy (>=1.6.3)
Requires-Dist: torch (>=1.8.1)
Requires-Dist: numpy (>=1.21.2)
Requires-Dist: pandas (>=1.2.4)
Requires-Dist: nimfa (>=1.1.0)
Requires-Dist: SigProfilerMatrixGenerator (>=1.2.17)
Requires-Dist: sigProfilerPlotting (>=1.3.16)
Requires-Dist: SigProfilerAssignment (>=0.1.0)
Requires-Dist: pillow
Requires-Dist: statsmodels (>=0.9.0)
Requires-Dist: scikit-learn (>=0.24.2)
Requires-Dist: psutil (>=5.6.1)
Requires-Dist: reportlab (>=3.5.42)
Requires-Dist: PyPDF2 (>=1.26.0)
Description-Content-Type: text/markdown
[Description omitted; length: 17915 characters]

WHEEL

Wheel-Version: 1.0
Generator: bdist_wheel (0.34.2)
Root-Is-Purelib: true
Tag: py3-none-any

RECORD

Path Digest Size
SigProfilerExtractor/__init__.py sha256=ZRcPQNuFhRF0B2MgkOakQBbqftKYCvacjBMq0iyN5c8 49
SigProfilerExtractor/estimate_best_solution.py sha256=3kr--3nrTI5lumRqrD0WBv0okRVJDrP_iEVixHaeBVc 3993
SigProfilerExtractor/nmf_cpu.py sha256=2JQtwgVV6jpwLLmLyr5jCHw3pHKnInKb9OqdU080V2A 9307
SigProfilerExtractor/nmf_gpu.py sha256=pVRZPT9KQ2DJHt-dqIWBwEHtvonu7243B_jJPa9VhAI 9273
SigProfilerExtractor/sigpro.py sha256=1bce4Y-TVYu1eg3RP-c2KrcW8tBhwppYHoFtBIfF1hQ 45700
SigProfilerExtractor/subroutines.py sha256=EVjPzViLN-ZX4UHfBiOTt6ApNMTjRwixWyN2rLOREm8 63038
SigProfilerExtractor/version.py sha256=jEu2f-o6Tzy1YP4miA-mO1BhmtwjShXtps08gXKGmwo 218
SigProfilerExtractor/data/CNVInput/Battenberg_test.tsv sha256=C-1MFcKzgAaYofmqRdpji_Xfu-uvnmQ4lQTeZOsYsa8 885369
SigProfilerExtractor/data/CSVInput/csv_example.csv sha256=V1NZm9p1E4kj9gSqrvu1_S51aHkhVkcMMEg00f76EE8 3851
SigProfilerExtractor/data/MatObjInput/21_breast_WGS_substitutions.mat sha256=LyZbW5p39pz5yHt60QLnkD8XDGtZFNQHrN-iyn48240 3342
SigProfilerExtractor/data/ReferenceFiles/CNV_features.tsv sha256=ugZNJUNLQ5Vusct60IaWcJSUUqxu6P_D-IlJj2zqUPo 803
SigProfilerExtractor/data/ReferenceFiles/CN_classes_dictionary.txt sha256=_DXtq5eId4lGOdF8htPxzu3N-4avIWyl1AWmCzaGJOs 1641
SigProfilerExtractor/data/TextInput/SamplesSBS1536.txt sha256=O1ok7xGLxuMPvrXVm4EM6K3RvbaZOnQO_Pqdeyl-OYk 41814
SigProfilerExtractor/data/TextInput/Samples_CNV.txt sha256=e_yeHQh5ddiRHyMpxBgA6SkJ6VKPaj8lLQcQ_QEGxWI 12790
SigProfilerExtractor/data/TextInput/Samples_DBS.txt sha256=H9vmHBL4BWm3p1yuhaFpzLMD9kFik9CpUT-Pqo_6ox4 1469
SigProfilerExtractor/data/TextInput/Samples_ID.txt sha256=_Zsrie9ig7Ue8590h6qIO8kBCyR8DnAjh3RnX-5hvbo 2087
SigProfilerExtractor/data/TextInput/Samples_SBS.txt sha256=_NqBTgmIHNr7CDFw9MHTur8zLDCUOX4OUFsTnIf3ebw 7124
SigProfilerExtractor/data/TextInput/Samples_SV.txt sha256=dQHswBoWLMRZmYT4kiniYGfI-WbxT6h4sP1fE69olzQ 1165
SigProfilerExtractor/data/VCFInput/PD3851a.vcf sha256=cpJSgBpqHcw2VH6orknYmoVTg65hpE056iT0yaGNcpI 42134
SigProfilerExtractor/data/VCFInput/PD3890a.vcf sha256=i8v7dWQBdWAEWXwjF-Z6OG6h-i6pr0GR6u6lTuqIhwM 144692
SigProfilerExtractor/data/VCFInput/PD3904a.vcf sha256=SekC5MjZQ1wAOVQV3kjAIjvsL5lOstDlagOMK0XU6nY 132516
SigProfilerExtractor/data/VCFInput/PD3905a.vcf sha256=vf6YH22GpRtp-NvMulpbhaHmMQzsKSnmguF2oDakP5A 108261
SigProfilerExtractor/data/VCFInput/PD3945a.vcf sha256=K1DxZEaMk0abDt-nGnx6MXVyhIFqNCg_STE5XtbdzZk 243267
SigProfilerExtractor-1.1.23.dist-info/LICENSE.txt sha256=5TJH23raqYq_6ZBV6Czri6cvYV78kcCfllA_tdKpcbI 1351
SigProfilerExtractor-1.1.23.dist-info/METADATA sha256=8XR57q9lrM9o5ZABZ6s-IYoRC3yrq3j59Tw4tU6qsMQ 18753
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SigProfilerExtractor-1.1.23.dist-info/top_level.txt sha256=6PjHqV28BkOTBTczRP4pmD6ffSwZV9_NK4xqPlLdKx0 21
SigProfilerExtractor-1.1.23.dist-info/RECORD — —

top_level.txt

SigProfilerExtractor