Reverse Dependencies of toil

The following projects have a declared dependency on toil:

• arctic-ai — Python package for Arctic Workflow. Mirrors jupyter developments.
• gvc4bam — GVC4BAM is a data processing pipeline developed by Genome Wisdom Inc. GVC4FASTQ detects germline and somatic mutations (SNV, InDel, SV) from BAM files.
• gvc4fastq — GVC4FASTQ is a data processing pipeline developed by Genome Wisdom Inc. GVC4FASTQ detects germline and somatic mutations (SNV, InDel, SV) from FASTQ files.
• gvcss — gvcss is single sample somatic mutations (SNV, InDel, SV) from FASTQ files.
• rapthor — Rapthor: LOFAR DDE Pipeline
• renku — Python SDK and CLI for the Renku platform.
• renku-lock — Python SDK and CLI for the Renku platform. lock package
• toil-batch-system-tes — A TES batch system plugin for Toil
• toil-container — A python package with a Toil Job Class capable of containerized system calls.
• toil-cwl-runner — Pipeline management software for clusters using CWL.
• travail — Pipeline for processing samples in context of rare mendelian diseases
• wes-service — GA4GH Workflow Execution Service reference implementation