varcode

View on PyPIReverse Dependencies (3)

1.2.0 varcode-1.2.0-py3-none-any.whl

Wheel Details

Project: varcode
Version: 1.2.0
Filename: varcode-1.2.0-py3-none-any.whl
Download: [link]
Size: 120255
MD5: 96688d527c83d63833134c5393b73694
SHA256: fd2bb84b39039cfc6adf13d834bec8294a7630b651c605665169c067a624f3cd
Uploaded: 2024-01-30 17:45:30 +0000

dist-info

METADATA

Metadata-Version: 2.1
Name: varcode
Version: 1.2.0
Summary: Variant annotation in Python
Author: Alex Rubinsteyn
Author-Email: alex.rubinsteyn[at]unc.edu
Home-Page: https://github.com/openvax/varcode
License: http://www.apache.org/licenses/LICENSE-2.0.html
Classifier: Development Status :: 4 - Beta
Classifier: Environment :: Console
Classifier: Operating System :: OS Independent
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: Apache Software License
Classifier: Programming Language :: Python
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Requires-Dist: numpy (<2.0,>=1.7)
Requires-Dist: pandas (>=0.15)
Requires-Dist: pyensembl (>=1.8.1)
Requires-Dist: biopython (>=1.64)
Requires-Dist: pyvcf3 (>=1.0.0)
Requires-Dist: memoized-property (>=1.0.2)
Requires-Dist: serializable (>=0.2.1)
Requires-Dist: sercol (>=0.1.4)
Description-Content-Type: text/markdown
License-File: LICENSE
[Description omitted; length: 6227 characters]

WHEEL

Wheel-Version: 1.0
Generator: bdist_wheel (0.42.0)
Root-Is-Purelib: true
Tag: py3-none-any

RECORD

Path Digest Size
tests/__init__.py sha256=QOQYriR6Il1xmNt8ccJQb5or9KJcL90ZlGUcLJIF4P8 610
tests/benchmark_vcf_load.py sha256=-cD3MXQ_xUz31FiRgc7ZJL5JZyfdffsfSpkJx-ekceM 1765
tests/common.py sha256=E0-Y901xKeaZR9sRecFt9FEIWU8Kdpe9KQLvxv7D-xs 3003
tests/data.py sha256=plrO0wUixWcgnSjdQAgKVbwrKcw3kUYUC96MLTMwo5c 1492
tests/test_cli_effects.py sha256=KGSbRHDvocSktk4fjDdM7bv30yq9RSAaNwHIrDXjYFs 1685
tests/test_cli_genes.py sha256=epi3LkrKK3DsYiF_TE7PzOM4-gYSuEcWIPv19w5EeSk 1610
tests/test_collection_filtering.py sha256=St0Lo_ixynlX0orXftrXV2qLQZBP9Brae_wWdoUTVf0 2809
tests/test_common.py sha256=kICs6Ob3vpRa8s7djGp1koVZH9gAS-UVaAdtM97wppA 1705
tests/test_cosmic_mutations.py sha256=trPmdD4aXBML2pF_8gV-U53Yc4KIM1S4uxxxeKn0Q1Q 7400
tests/test_dbnsfp_validation.py sha256=2IQX86tuvelrfBqNTXJA_J1gHHgvb3_oq6uwkwo31kE 3491
tests/test_effect_annotation_errors.py sha256=XX_9s9hRAzc3KbWbQScKmGziyjp1i1pjDXqnKgd6qKk 10667
tests/test_effect_classes.py sha256=sYYa-71mJ7sEpGdCp-GR5gj2MeAKGq-0GKxu9UuFV0I 20049
tests/test_effect_collection.py sha256=FITkNOi1iVfK3s1csjwaB3rL7NNI6djctL_0MrV-hFE 2743
tests/test_effect_collection_serialization.py sha256=DtKVjtI4_4bBUOUjpPwciD2FBdp-R3Z8GQ_HiaWejOI 1635
tests/test_effects_from_mutagenix_variants.py sha256=I5dCDDaaj0LOZ2Uxt0eVUzYDuD0QbP1JNBVvpxFiTKU 2093
tests/test_exonic_splice_site.py sha256=ReKlLqiqvbyECvJ9qevWfGQhnCBEmuIet2qejA9NYZA 1105
tests/test_frameshift_helpers.py sha256=kOyhUcWHd0nBVajRljwnOOEp3_KibnV_fduhtYL9pc0 2690
tests/test_maf.py sha256=HBiR_nvLRYQ___If_5SlTNL0KIcB1cZMjp21vDDQ2l8 4312
tests/test_mm10_klf6_frameshift.py sha256=u4kc1cOxvKWEvQcwDLlZPyMHur8l2GtwIfUb1SN64Vw 2702
tests/test_mouse.py sha256=LDHlMg5aJOyWSzClOUbZkibvDyu6-mbqof11CW9f0Xc 4040
tests/test_mutate.py sha256=LHmhh8zW3wsLzVmuPfMjMJLKvYwUiiVRoYIlfbVmJx0 1059
tests/test_no_duplicate_variants.py sha256=NiXr0ZcdZxShuC-46s7JTlSh49fHTQksnrIuA8iSK5g 1005
tests/test_problematic_variants.py sha256=heAOpBZbolZvBgJjYR4sPgZzHLSP9ca7j80Ltvr_aYI 4294
tests/test_reference.py sha256=8EEJYUcgbTTJaBZLtRGXmaQlOGH40vN7RiCp93VvslM 2676
tests/test_string_helpers.py sha256=6ioG2sO-7zPAAUhQRCEzL4nJw688-fU5LdBz391nihA 1791
tests/test_timings.py sha256=8nYDJkz98ppUsejq0FEVqEZx8qi7k8m1lfd2VAti6Pc 1531
tests/test_variant.py sha256=nIb5Ao10SSEHqCE7jod9K6SAUF9eAuKfxaGhfJ-9d2s 8118
tests/test_variant_collection.py sha256=vGBclpGASaX_i9zpU_A-FUiAIPPz_0RWftbiAiIThVk 5708
tests/test_vcf.py sha256=g0XpYfIcfupZphM47jD2l5yUqLXx75iLtZu9Azkvj0s 6290
tests/test_vcf_output.py sha256=pcAvWdxaEB_PQwNmrqwROCPLYbWpKdR7DYusC9BKZ0E 5467
varcode/__init__.py sha256=92PallxywE1r9ZvPenNllHmhuOwoLF9Jb4uMrWr2FgE 1226
varcode/common.py sha256=rguXPxpCQPCb-4z90rvW-Bc-LPIzVYpiIngKvqdnqlc 2196
varcode/maf.py sha256=BtQ5vs_cGsi4zGWEtDAW0MsKRRHIKdmzmBnrECebVkU 7421
varcode/nucleotides.py sha256=dkKVNrpQNyfxTMq85XJMeMJa2PP_sEPtcE6Wkka0oJg 3289
varcode/reference.py sha256=i250X2ExyadOucvMXHw7tUHdDY5Yf-lExvyYj-pLrPk 11398
varcode/string_helpers.py sha256=RB2a_pdqf3V_iGfgQJha6ffaEKxwFgAt5gxaAyB9AbI 2656
varcode/ucsc_reference_names.py sha256=wTJBDpwG4EeZf8NYtZbsybVL3alEn6e9KOFbAEAamn4 745
varcode/util.py sha256=qMF2EcN5RHFZrCsxBbW9xXvXfRJfrDk5Q-K3E0Cc7m0 3116
varcode/variant.py sha256=BNUYAfYpO-EIAmcRDbencpgaS-uP6SMf6haK9xkTkkM 19172
varcode/variant_collection.py sha256=FLWe3b82n-2AeOXSRGJXJs9OBMgX_ObXRoJab9Dkzts 12817
varcode/vcf.py sha256=o-pxwnlfLh9jIc0o4HGyrPgSyurDbIOZzafA3UXx2js 18810
varcode/vcf_output.py sha256=_ZLfTFyEJQlNZuZzbNUKBiK_at9aYHG_optSozvKpyk 11775
varcode/version.py sha256=MpAT5hgNoHnTtG1XRD_GV_A7QrHVU6vJjGSw_8qMGA4 22
varcode/cli/__init__.py sha256=Kb5xkRhEv55iG9_jMi3Iykh4ExKTRanlKw9sU785KO8 760
varcode/cli/effects_script.py sha256=eOWFPDHcRtOhOljoULjaACKfbBwxeVKOAkv9zJvrc3s 2447
varcode/cli/genes_script.py sha256=EyJDWrBZG0S7CPVNfgt2PhPgNO8berh9BQzPYBydS3A 1732
varcode/cli/logging.conf sha256=-OOHto7vatJaX_Qc1WagVSZwGiibQutpNZybymMwoRw 812
varcode/cli/variant_args.py sha256=cw9DGWM5-WQtUsBtTNFSMyoqQUtGnaoU8N0AIfIPxtk 5037
varcode/cli/version_info.py sha256=E5DsMGw47aEcTs0bVdMtm0E-gwJdvMi0z2YtPbLM3Po 1232
varcode/effects/__init__.py sha256=0vI-619lC1F_ubx4drTVAheufD8F9JQRrch3Hqp3i7E 2346
varcode/effects/common.py sha256=lHi2sgVHeCmESWAcO4GLtGBbtljAQDPdkYqiptlcFH8 680
varcode/effects/effect_classes.py sha256=99e2GUzZ-I3FPWN1P6S5WIH7arBsxJ7ulxys_nPPPJ0 22611
varcode/effects/effect_collection.py sha256=Ef21T9xvHJ_qhmTlWwVuRA4ARlN6cQ23f7YGSnukbjk 11071
varcode/effects/effect_helpers.py sha256=JMoNj4r76MGG8qZ_zZ1FgG5Z5s3AfcEI-FLIdvAu1zA 5950
varcode/effects/effect_ordering.py sha256=XooE5sYeLJxPm-U__X-zwR5h97qdUp1MexURoyqKRqo 17439
varcode/effects/effect_prediction.py sha256=PjrJgfA42k6P0sMm4GZ1bv56UXMMVHMIlxWbLf6ZwyM 15057
varcode/effects/effect_prediction_coding.py sha256=ODZIayDvBh9-fUNqhUnLyUhUDLa-oUGHJAxKtg2IdPs 4827
varcode/effects/effect_prediction_coding_frameshift.py sha256=H3lV900Gt3UNoqxfnrm66IQaHLvIni8WbpKYO0RGjUk 9434
varcode/effects/effect_prediction_coding_in_frame.py sha256=vr-RqOQWDgcSoglWjVXVotDXvZPIQiX-Or_FwFhBoGU 9845
varcode/effects/mutate.py sha256=nNh4GdKwySyGxPR5-I92XyV3hMbwC3-IXDODJW5MY28 2607
varcode/effects/transcript_helpers.py sha256=CU6tqiZwxyCvfWJsgTmv6ne-7nsarAr8GwGsv48_ldk 1924
varcode/effects/translate.py sha256=q_UJj40v-915wb-xfbgls_IcY9OnvhRZKw6B_ezD39U 7008
varcode-1.2.0.dist-info/LICENSE sha256=y16Ofl9KOYjhBjwULGDcLfdWBfTEZRXnduOspt-XbhQ 11325
varcode-1.2.0.dist-info/METADATA sha256=uWyF2UZS5I0dXAGmtlcYCnDz27B1a4242oLNaw3vzAQ 7151
varcode-1.2.0.dist-info/WHEEL sha256=oiQVh_5PnQM0E3gPdiz09WCNmwiHDMaGer_elqB3coM 92
varcode-1.2.0.dist-info/entry_points.txt sha256=x2i5vQTU8XXvaUnhPueRmFupFoSLabe0vIYnMEPAeYs 106
varcode-1.2.0.dist-info/top_level.txt sha256=cTlzXWsdo-tXI6oPJ6pBJ2o6SfhGheRY25imUzWFSuo 14
varcode-1.2.0.dist-info/RECORD

top_level.txt

tests
varcode

entry_points.txt

varcode = varcode.cli.effects_script:main
varcode-genes = varcode.cli.genes_script:main