aldy

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4.1 aldy-4.1-py3-none-any.whl
3.3 aldy-3.3-py3-none-any.whl

Wheel Details

Project: aldy
Version: 3.3
Filename: aldy-3.3-py3-none-any.whl
Download: [link]
Size: 4979541
MD5: 652ed96ed3aff5d7e72d575096bef244
SHA256: 8236cab87aa389bf7b611844163a1973ba0f689c8224e958bde10e899bd0f9e3
Uploaded: 2021-06-17 18:18:32 +0000

dist-info

METADATA

Metadata-Version: 2.1
Name: aldy
Version: 3.3
Summary: A tool for allelic decomposition (haplotype reconstruction) and exact genotyping of highly polymorphic and structurally variant genes
Author: Ibrahim Numanagić
Author-Email: inumanag[at]mit.edu
Home-Page: http://aldy.csail.mit.edu/
Download-Url: https://github.com/inumanag/aldy/tarball/master
License: Aldy/IURTC License. Free for academic/non-commercial use.
Keywords: cyp2d6,adme,genotyping,illumina,pgrnseq,getrm,allele
Requires-Dist: pyyaml
Requires-Dist: logbook
Requires-Dist: pysam
Requires-Dist: pytest
Requires-Dist: ortools
Requires-Dist: natsort
[No description]

WHEEL

Wheel-Version: 1.0
Generator: bdist_wheel (0.36.2)
Root-Is-Purelib: true
Tag: py3-none-any

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aldy-3.3.dist-info/RECORD

top_level.txt

aldy

entry_points.txt

aldy = aldy.__main__:console