ark-analysis

View on PyPIReverse Dependencies (1)

0.7.0 ark_analysis-0.7.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_28_x86_64.whl
ark_analysis-0.7.0-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.manylinux_2_28_aarch64.whl
ark_analysis-0.7.0-cp39-cp39-win_amd64.whl
ark_analysis-0.7.0-cp39-cp39-macosx_10_9_x86_64.whl
ark_analysis-0.7.0-cp39-cp39-macosx_10_9_universal2.whl
ark_analysis-0.7.0-cp39-cp39-macosx_11_0_arm64.whl
ark_analysis-0.7.0-cp311-cp311-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_28_x86_64.whl
ark_analysis-0.7.0-cp311-cp311-manylinux_2_17_aarch64.manylinux2014_aarch64.manylinux_2_28_aarch64.whl
ark_analysis-0.7.0-cp311-cp311-win_amd64.whl
ark_analysis-0.7.0-cp311-cp311-macosx_10_9_x86_64.whl
ark_analysis-0.7.0-cp311-cp311-macosx_10_9_universal2.whl
ark_analysis-0.7.0-cp311-cp311-win_arm64.whl
ark_analysis-0.7.0-cp311-cp311-macosx_11_0_arm64.whl
ark_analysis-0.7.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_28_x86_64.whl
ark_analysis-0.7.0-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.manylinux_2_28_aarch64.whl
ark_analysis-0.7.0-cp310-cp310-win_amd64.whl
ark_analysis-0.7.0-cp310-cp310-macosx_10_9_x86_64.whl
ark_analysis-0.7.0-cp310-cp310-macosx_10_9_universal2.whl
ark_analysis-0.7.0-cp310-cp310-win_arm64.whl
ark_analysis-0.7.0-cp310-cp310-macosx_11_0_arm64.whl

Wheel Details

Project: ark-analysis
Version: 0.7.0
Filename: ark_analysis-0.7.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_28_x86_64.whl
Download: [link]
Size: 709450
MD5: b9909c683afadf229d3bd4c593980702
SHA256: 6324d1e8b3b7d37255befb0f0cf65a14124ad5f22a3ca56b57323bfea022f2e0
Uploaded: 2023-12-06 23:20:17 +0000

dist-info

METADATA

Metadata-Version: 2.1
Name: ark-analysis
Version: 0.7.0
Summary: Toolbox for analysis on segmented images from MIBI.
Author-Email: Angelo Lab <theangelolab[at]gmail.com>
Project-Url: repository, https://github.com/angelolab/ark-analysis
License: Modified Apache License 2.0
Classifier: Development Status :: 4 - Beta
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.9
Classifier: Programming Language :: Python :: 3.10
Classifier: Programming Language :: Python :: 3.11
Classifier: License :: OSI Approved :: Apache Software License
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Requires-Python: >=3.9
Requires-Dist: alpineer (==0.1.10)
Requires-Dist: Cython (<1,>=0.29)
Requires-Dist: datasets (<3.0,>=2.6)
Requires-Dist: dill (<0.4,>=0.3.5)
Requires-Dist: feather-format (<1,>=0.4.1)
Requires-Dist: importlib-metadata (>=5.0)
Requires-Dist: ipympl (<1.0.0,>=0.9.2)
Requires-Dist: ipython (<9,>=8.4)
Requires-Dist: jupyterlab (<4,>=3.4.3)
Requires-Dist: matplotlib (<4,>=3.7)
Requires-Dist: multiprocess (>=0.70.13)
Requires-Dist: natsort (<9,>=8)
Requires-Dist: numpy (<1.24,>=1.20)
Requires-Dist: palettable (<4,>=3.3.0)
Requires-Dist: pandas (>=2)
Requires-Dist: pillow (<10,>=9)
Requires-Dist: pyFlowSOM (>=0.1.15)
Requires-Dist: requests (<3,>=2.20)
Requires-Dist: scikit-image (<=0.19.3)
Requires-Dist: scikit-learn (<2,>=1.1)
Requires-Dist: scipy (<2,>=1.7)
Requires-Dist: seaborn (<1,>=0.12)
Requires-Dist: spatial-lda (<1,>=0.1.3)
Requires-Dist: statsmodels (<1,>=0.13.2)
Requires-Dist: tifffile (>=2022)
Requires-Dist: tqdm (<5,>=4)
Requires-Dist: umap-learn (<1.0,>=0.5)
Requires-Dist: xarray (>=2022)
Requires-Dist: xmltodict (<1,>=0.13.0)
Requires-Dist: zstandard (<1,>=0.19.0)
Requires-Dist: ark-analysis[colors]
Requires-Dist: palettable; extra == "colors"
Requires-Dist: cmasher; extra == "colors"
Requires-Dist: cmocean; extra == "colors"
Requires-Dist: colorcet; extra == "colors"
Requires-Dist: scienceplots; extra == "colors"
Requires-Dist: jupyterlab-lsp; extra == "lab-ext"
Requires-Dist: python-lsp-server[all]; extra == "lab-ext"
Requires-Dist: jupyterlab-git; extra == "lab-ext"
Requires-Dist: jupyterlab-execute-time; extra == "lab-ext"
Requires-Dist: jupyterlab-skip-traceback; extra == "lab-ext"
Requires-Dist: lckr-jupyterlab-variableinspector; extra == "lab-ext"
Requires-Dist: attrs; extra == "test"
Requires-Dist: coveralls[toml]; extra == "test"
Requires-Dist: pytest; extra == "test"
Requires-Dist: pytest-cases; extra == "test"
Requires-Dist: pytest-cov; extra == "test"
Requires-Dist: pytest-mock; extra == "test"
Requires-Dist: pytest-pycodestyle; extra == "test"
Requires-Dist: pytest-randomly; extra == "test"
Requires-Dist: pytest-asyncio; extra == "test"
Requires-Dist: testbook; extra == "test"
Provides-Extra: colors
Provides-Extra: lab_ext
Provides-Extra: test
Description-Content-Type: text/markdown
License-File: LICENSE
[Description omitted; length: 19389 characters]

WHEEL

Wheel-Version: 1.0
Generator: bdist_wheel (0.42.0)
Root-Is-Purelib: false
Tag: cp39-cp39-manylinux_2_17_x86_64
Tag: cp39-cp39-manylinux2014_x86_64
Tag: cp39-cp39-manylinux_2_28_x86_64

RECORD

Path Digest Size
ark/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
ark/settings.py sha256=xLivtJtYNz6p-SaEpb2Vpy95o6R-n4w4VR-PC29MBeA 2465
ark/spLDA/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
ark/spLDA/processing.py sha256=P5DCqXl8UFh3qxrMY_oUZKvci7Mc34q36lidp78Ifv4 15050
ark/segmentation/signal_extraction.py sha256=Oboo3fesRjWw3oyaeMgPefFUASEZGBcbw9wRvxEq8kc 2643
ark/segmentation/regionprops_extraction.py sha256=30SpgTvLVHL7_Hf_KnTCrUWihZMp3kTHM_T2g2DEC_g 5538
ark/segmentation/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
ark/segmentation/fiber_segmentation.py sha256=3xa7tM7B4AbKEfiQvFLs4NE_mq4TbzH2hrLYkopiiK8 23185
ark/segmentation/marker_quantification.py sha256=K419M81HLi1oDVP15GWSS8R2y9gKVQiccH8e6HTbmkM 27311
ark/segmentation/segmentation_utils.py sha256=0V071p2cVn3vQsOK70etD4aMWyf6tR0FUT88hCEgTrg 9584
ark/segmentation/ez_seg/ez_seg_display.py sha256=tUqpOS9zrfEVDRz1T9_oTCIHTA_-Wy0RgM8ecikjQGk 7644
ark/segmentation/ez_seg/__init__.py sha256=x2LYwowlPUTCYOl0SrWXPesHp1SVYTuL1AEW3_kji3g 245
ark/segmentation/ez_seg/composites.py sha256=ig7NkzQ4tec4GTBRGnzWITvewbXBQFmOlF-iz4lXZR8 6975
ark/segmentation/ez_seg/merge_masks.py sha256=PNsCzSbNCc9r_6Mq3Q74hd2c5mr9sB7uzS8_em47kYI 7006
ark/segmentation/ez_seg/ez_object_segmentation.py sha256=8o7e0FRm9KTytSvCn8Xo3oG43KtCAb-zkUzbNDXYVHM 11657
ark/segmentation/ez_seg/ez_seg_utils.py sha256=YKys2uPojgfUIW3wpO4TYmvIe9gZdu8MymiK_n4hUdQ 7286
ark/phenotyping/weighted_channel_comp.py sha256=CB5J45joGuH5lDzMD6AggAcShyJYDp8FBecOQSooJ_g 20450
ark/phenotyping/pixel_cluster_utils.py sha256=k4R7nBwB7b79cN-wDAhEshixjCNs-8S7iOaa2D-Pb3s 17905
ark/phenotyping/pixie_preprocessing.py sha256=GvPM94E-46bOUUpbYxmNsfW16PQ_5oVLJfJ_GMz97pQ 19527
ark/phenotyping/cell_meta_clustering.py sha256=8zvM2Fki_htLUT5Jbym8ez_TQIoCVrsxRHo3PcHzV4g 13260
ark/phenotyping/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
ark/phenotyping/post_cluster_utils.py sha256=TC0DoO_e8d_STha7uDl5KIDR-QehIhespCVvFUAKNc8 6702
ark/phenotyping/cell_som_clustering.py sha256=z79phIkel6CqO8Lx_zV5xa5CupJq6RYxC5uTRwEDdj8 7645
ark/phenotyping/pixel_meta_clustering.py sha256=3TERi6ZV0BFK9C9voXF97HpBjcoizxPXdPU8mAUwHmQ 21819
ark/phenotyping/pixel_som_clustering.py sha256=gScj30GL6diViWcebtnbzy5OsQx25gitB0Rosl_-qJk 14500
ark/phenotyping/cluster_helpers.py sha256=uW-0_fsQwLJFXHRv6fpqWOWN4Htv9SyJE2bKYZ0rshY 27211
ark/phenotyping/cell_cluster_utils.py sha256=L9DJ76CyBknJe2dz8LhMs4d29OHARpagXOsafGSTTfU 10516
ark/analysis/cell_neighborhood_stats.py sha256=-Ma1Ntzh8sHSuXlQHd0V3ze7L9kiYqYWjm1ER7RDGwY 9064
ark/analysis/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
ark/analysis/visualize.py sha256=i_dFwtTS4gvgO-aEAwMblmq4At3fNNrQRKNQMeRoi50 19245
ark/analysis/dimensionality_reduction.py sha256=lP8ea1ES2Ys6CNt9E5pnS5UMkbgmCiAd6bF8oNg4vcg 5146
ark/analysis/neighborhood_analysis.py sha256=F-luZrTNK4m7xQO90S1P7Q7_8q5lXaw-5PpCjJF7bHk 23877
ark/analysis/spatial_analysis_utils.py sha256=MDMNeVFuRtleqLq8DP3ZVCYVUfHy1kFtdVcfVz7yueY 24735
ark/analysis/spatial_enrichment.py sha256=iqVNbojsHtRZ2z2TnWrBS3fyETgIUOuJR0XKpM2Mvtk 19940
ark/utils/data_utils.py sha256=C85fwAGersdRd62peon5VT6L_Xn6DtA8z43Wv6OTO9E 30298
ark/utils/plot_utils.py sha256=kDPpwGK44pznwYzdiByvVz8rOrhRRxvLj3LQLlD4B0w 50989
ark/utils/spatial_lda_utils.py sha256=zMjLbCODLzIly5odjTAiExbbJpk6EyOzNXvEMphQVOU 10260
ark/utils/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
ark/utils/_bootstrapping.c sha256=fUSC5orI0G8sl6fCLgao8RR5XdrFC8yWnx87gKFFTBI 975803
ark/utils/example_dataset.py sha256=QAyR3WwgrPQKPKAjwPCKlFkOpaK2uBQX6YM3BIcppKk 8798
ark/utils/_bootstrapping.pyx sha256=qB-BVRWfbp5igzHsANYqmOkZ8tIE8BDl1pbjQfm4mTs 11326
ark/utils/deepcell_service_utils.py sha256=8iOLxyvP_Tkci5jWEGQe3e9DyzD1ulp05-ImQIDGFl8 15871
ark/utils/_bootstrapping.cpython-39-x86_64-linux-gnu.so sha256=ykRNLXWPBE4HJZ2Ns1ObeF9E_X3XQfVu1uOhMe37vKM 1429648
ark/utils/metacluster_remap_gui/throttle.py sha256=Lm1EuAW4AeyvCqHV6Ne17HQUkbLzlbMcp2jVD_HGVLg 1858
ark/utils/metacluster_remap_gui/__init__.py sha256=xn_sf7p91Q__x1sx5MeB5MAfyXLHRRBCBVW83Kc9naY 213
ark/utils/metacluster_remap_gui/zscore_norm.py sha256=99J7dwMFXCkOT44SoyDKENdDDKLQ5wbXy3Z-mxjaVj8 1587
ark/utils/metacluster_remap_gui/file_reader.py sha256=2lO73UoTZR0OvrTQPYxL5xgrejgp1si3lUPI4LB4nWs 2833
ark/utils/metacluster_remap_gui/metaclusterdata.py sha256=Np_qsSmoTY1Wcc5qrZVjrDpTJs57cJ9m2ToHs2hyhSs 5790
ark/utils/metacluster_remap_gui/colormap_helper.py sha256=HhkyAhKSh3z9lFpk9-8EIIcBW-40RnmOCGOK9cRzFak 3894
ark/utils/metacluster_remap_gui/metaclustergui.py sha256=kiL0SSysZIVJtkdAXPCypUTiTdHQHr3nNTEe79cKWA8 22311
ark_analysis-0.7.0.dist-info/LICENSE sha256=icNP4hEXl20enF3AgkAYvpfFMoW4KkUkpCHAqM1kKdc 1082
ark_analysis-0.7.0.dist-info/METADATA sha256=Nj3NUE1PdbC5zGQd6YOaPZk2L6E5Z8HcKh552LllMXg 22732
ark_analysis-0.7.0.dist-info/RECORD
ark_analysis-0.7.0.dist-info/top_level.txt sha256=GvM87AHKwkkvIN4c8QP2WILF2jp67ns1g_pv5owIQXQ 4
ark_analysis-0.7.0.dist-info/WHEEL sha256=zzK0tV3AhcS1Xk1LDTiM7Hm3dfeWxmdRCswnJkyg4mw 185

top_level.txt

ark