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0.6.0 biodem-0.6.0-py3-none-any.whl

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Project: biodem
Version: 0.6.0
Filename: biodem-0.6.0-py3-none-any.whl
Download: [link]
Size: 41283
MD5: c3b5aa969d19043d2b4a389d29938fda
SHA256: a9301034504f208f5fb309cf6779c1bdf3e1e45dcde16792214f080e5e508a5a
Uploaded: 2024-05-06 03:38:38 +0000

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METADATA · WHEEL · RECORD · entry_points.txt

METADATA

Metadata-Version: 2.3
Name: biodem
Version: 0.6.0
Summary: Dual-extraction method for phenotypic prediction and functional gene mining of complex traits.
Author-Email: Chenhua Wu <chanhuawu[at]outlook.com>, Yanlin Ren <ryl1999[at]126.com>
Project-Url: Homepage, https://github.com/cma2015/DEM
License: MIT License Copyright (c) 2024 Ma Lab Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions: The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software. THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
Keywords: bioinformatics,deep-learning
Classifier: Development Status :: 4 - Beta
Classifier: Environment :: GPU
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: MIT License
Classifier: Operating System :: MacOS
Classifier: Operating System :: Microsoft :: Windows :: Windows 10
Classifier: Operating System :: Microsoft :: Windows :: Windows 11
Classifier: Operating System :: POSIX :: Linux
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.10
Classifier: Programming Language :: Python :: 3.11
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Requires-Python: <3.12,>=3.10
Requires-Dist: h5py (>=3.9.0)
Requires-Dist: json5 (>=0.9.24)
Requires-Dist: lightning (>=2.2.2)
Requires-Dist: numpy (>=1.25)
Requires-Dist: optuna (>=3.6.0)
Requires-Dist: pandas (>=2.2.1)
Requires-Dist: pysam (>=0.22.0)
Requires-Dist: scikit-learn (>=1.4.0)
Requires-Dist: scipy (>=1.12.0)
Requires-Dist: tensorboard (>=2.15)
Requires-Dist: tensorboardx (>=2.6.0)
Requires-Dist: torch (>=2.2)
Requires-Dist: torchmetrics (>=1.3.1)
Requires-Dist: xarray (>=2024.1.0)
Description-Content-Type: text/markdown
License-File: LICENSE
[Description omitted; length: 18598 characters]

WHEEL

Wheel-Version: 1.0
Generator: hatchling 1.24.2
Root-Is-Purelib: true
Tag: py3-none-any

RECORD

Path Digest Size
biodem/__init__.py sha256=hEifwn9sSGRXw_B_vrVsU489ECdWHFOlv39imQxAgaQ 689
biodem/cli_dem.py sha256=RT4EGYILyVWC8RaiEzoSbdsyXyW20odAoOBx59rpUAg 12119
biodem/model_dem.py sha256=JSlmxASX97dE7gjS9C2x7cNqXpLcD7PTEkT6rs3QtDo 23964
biodem/model_snp2gene.py sha256=BKQPSbykFU9WNNC3tb_dhuHvdmC1-CL-hVANEvHppyg 25244
biodem/module_data_prep.py sha256=F1pulRbKou7r0mHTLRgsYPNtQQiJOqbqJB7yt1e4Bk8 7177
biodem/module_data_prep_ncv.py sha256=ofzMDYwB5a5xjNJCm5jfN1BOIaiCVjTwtZzis-pmwxY 13501
biodem/module_dem.py sha256=acSPJGySBhJ5KMj_Y2l8hq3gSUYUIU7UW-MHDdYKZS0 20556
biodem/module_snp.py sha256=dWJr3ACsKM1GpukwqGJWdpYjl4HbAz1DDbmus0Fs__s 18229
biodem/utils.py sha256=VadD2U7-1ddUIo43tkoODpihXeDO8VIlvLSpMxfJPZg 17927
biodem/utils_encode_snp_vcf.jl sha256=q7kYU6rVUk4dgYmlvhK6BzUyg199oE-bV4OiVOZaIHM 3071
biodem/utils_vcf_gff.jl sha256=BQ0k3vrXULXaZIiMobDKY7Nb4g4v6YQI_tBWWhZaK0U 5906
biodem-0.6.0.dist-info/METADATA sha256=oBVttaNBhDJmYmS-MIJsUk8LZnTrh1Nb40APV6DvCHo 21387
biodem-0.6.0.dist-info/WHEEL sha256=zEMcRr9Kr03x1ozGwg5v9NQBKn3kndp6LSoSlVg-jhU 87
biodem-0.6.0.dist-info/entry_points.txt sha256=PNpmekh9WRfuiAmt-ZGfTRmbqa2kqKjOz8-8epqbxnA 556
biodem-0.6.0.dist-info/licenses/LICENSE sha256=cfrW56FRPwhqtT0tAgT-DM_N12__9UOSsVTTvaoTk9Y 1063
biodem-0.6.0.dist-info/RECORD — —

entry_points.txt

[console_scripts]
dem-hello = biodem.cli_dem:hello
dem-impute = biodem.cli_dem:cli_dem_impute
dem-predict = biodem.cli_dem:cli_dem_predict
dem-rank = biodem.cli_dem:cli_dem_rank
dem-s2g-pipe = biodem.cli_dem:cli_s2g_pipe
dem-select-rf = biodem.cli_dem:cli_dem_select_rf
dem-select-varpca = biodem.cli_dem:cli_dem_select_varpca
dem-train-pipe = biodem.cli_dem:cli_dem_train_pipe
filter-pheno = biodem.cli_dem:cli_filter_pheno
ncv-prep-c = biodem.cli_dem:cli_ncv_prep_class
ncv-prep-r = biodem.cli_dem:cli_ncv_prep_regre
rm-ckpt = biodem.cli_dem:cli_rm_ckpt