BioFlow

View on PyPIReverse Dependencies (0)

0.2.3 BioFlow-0.2.3-py2-none-any.whl

Wheel Details

Project: BioFlow
Version: 0.2.3
Filename: BioFlow-0.2.3-py2-none-any.whl
Download: [link]
Size: 131638
MD5: 8725cdbf3f1e3274107e597a2e0a8dba
SHA256: 2d9a1ee9af4d0c363c191522e675121020e6a02e2d30e3fbff6e9e3f6e65b6dc
Uploaded: 2018-10-22 21:10:43 +0000

dist-info

METADATA

Metadata-Version: 2.0
Name: BioFlow
Version: 0.2.3
Summary: Information Flow Analysis in biological networks
Author: Andrei Kucharavy
Author-Email: andrei.chiffa136[at]gmail.com
Home-Page: https://github.com/chiffa/BioFlow
License: BSD
Keywords: network analysis,systems biology,interactome,computational biology
Classifier: Development Status :: 3 - Alpha
Classifier: Intended Audience :: Science/Research
Classifier: Intended Audience :: Healthcare Industry
Classifier: Intended Audience :: Developers
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: Topic :: Scientific/Engineering :: Information Analysis
Classifier: Topic :: Scientific/Engineering :: Medical Science Apps.
Classifier: Topic :: Software Development :: Libraries :: Python Modules
Classifier: Operating System :: POSIX :: Linux
Classifier: License :: OSI Approved :: BSD License
Classifier: Programming Language :: Python :: 2.7
Classifier: Programming Language :: Python :: Implementation :: CPython
Requires-Dist: numpy (<2.0)
Requires-Dist: scipy (<1.0)
Requires-Dist: matplotlib (<2.0)
Requires-Dist: scikit-learn (<0.17)
Requires-Dist: cython (<0.23)
Requires-Dist: pymongo (<4.0)
Requires-Dist: requests (<3.0)
Requires-Dist: click (<6.0)
Requires-Dist: scikits.sparse (<0.3)
Requires-Dist: mock (<2.0)
Requires-Dist: requests-ftp (<0.4)
Requires-Dist: neo4j-driver (<2.0)
Requires-Dist: coverage; extra == "ci"
Requires-Dist: pylint; extra == "ci"
Requires-Dist: coveralls; extra == "ci"
Requires-Dist: pyflakes; extra == "ci"
Requires-Dist: pep-8-naming; extra == "ci"
Requires-Dist: maccabe; extra == "ci"
Requires-Dist: flake-8; extra == "ci"
Provides-Extra: ci
Provides-Extra: dev
Provides-Extra: test
[Description omitted; length: 10967 characters]

WHEEL

Wheel-Version: 1.0
Generator: bdist_wheel (0.24.0)
Root-Is-Purelib: true
Tag: py2-none-any

RECORD

Path Digest Size
bioflow/__init__.py sha256=rwVDr5ufNeyjYeUCno62XrrZMLbev-2bqdUCmtbEZ0o 55
bioflow/main_configs.py sha256=P6qhaGrqVwz1zmWsyaKLgINNVwHIESp1ngogBjNs__A 6444
bioflow/configs_manager.py sha256=-dxjf5Ue7AtsP_xnuq_ScQ8JI1aA6s5hygDLd-G_QpY 6857
bioflow/internal_configs.py sha256=9yoeh0H5xApeeqYIJKFtiCV-lQk3pi6BdIK6ha9usJ8 3527
bioflow/cli.py sha256=QNK3EXOcOuQThMc70QI1HFIlvx2HRwO-DW9aSYde64g 7912
bioflow/analysis_pipeline_example.py sha256=D9ephBJOeFUPww1k35HjQDAtRoOEbgzCu-ibBvcLSRY 2711
bioflow/molecular_network/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
bioflow/molecular_network/InteractomeInterface.py sha256=ctjq_aLWWUFCxmQsR5mNGdV3XuZNQe7YPsDZ0BoEUOg 54433
bioflow/molecular_network/interactome_analysis.py sha256=NFsdL2WsMix4JLeTAPmYgu5yx27YGsJQeoXeLUJkEnU 18555
bioflow/bio_db_parsers/reactomeParser.py sha256=s8WT4E6UlseD4nKrOYKw9V-82K-kz8PebJCQjzjxPX8 22019
bioflow/bio_db_parsers/geneOntologyParser.py sha256=3PEGM61ParNYUO-XoTsS_LsUCpTyjvCM5JiRbaLsWA4 3995
bioflow/bio_db_parsers/__init__.py sha256=UBg5x0WKzk6VgDXAnnNWYwm_gHWrucoZWUBbW4r_cmU 22
bioflow/bio_db_parsers/PhosphositeParser.py sha256=UA1KzzjnfpReBQ0OagnRjrg5-iB9qH5lPHPCNEKVA6Y 917
bioflow/bio_db_parsers/uniprotParser.py sha256=tTPUxmDIftdqcgngAPZYVDWhzI8XlPlewHh24PI48xA 10392
bioflow/bio_db_parsers/tfParsers.py sha256=cj645mUgDEGJ4QKbqn_mBXobBnqxINnaqiPp-DFq-mU 3082
bioflow/bio_db_parsers/proteinRelParsers.py sha256=3VUBJdIB2qSLTVQfsO2aQjn2yRIk8_TWaRw1N1r1AOs 1448
bioflow/bio_db_parsers/ComplexPortalParser.py sha256=VaJfJEqC0lfzx8isj-yvTjX44btkJKoy9hmDtJkbJ4s 1474
bioflow/configs/sources.ini sha256=fSXQfEw9o-5ObWP1z_08O-DHrq2TtvERMIb8jHnl9ac 566
bioflow/configs/options.ini sha256=h4ZtfzxI4_WmbfScP_B28LHLh6SmqFh1iR1aouJEM_8 43
bioflow/configs/predictions.ini sha256=szNFpq3j02NYU_wkORliP7cWbbYb-nSAFIw9Aep1Emk 168
bioflow/configs/servers.ini sha256=Nfhf2OUsiWgRqz_EoMJM9d3oV1GX9ZP7qsAOCa7FtBA 272
bioflow/configs/online_dbs.ini sha256=rnQYvZY26P6rQnwzJs6oUngza8tQ_QcYxI9eWXaKSHQ 2145
bioflow/pre_processing/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
bioflow/pre_processing/rna_counts_analysis.py sha256=ZMBI9D7Wq31GpcAHQwQOmcUc1Pcimn5R-v1MJcPpc98 7172
bioflow/algorithms_bank/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
bioflow/algorithms_bank/conduction_routines.py sha256=LeeOjI28ErjFGV05R3aW4J7ZeoL390d3Ss2aWKHlvuE 21845
bioflow/neo4j_db/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
bioflow/neo4j_db/cypher_drivers.py sha256=Zp8m2sLOt28H_ODtDJs-Y6QOPwDt4P9moFWVIL7apQI 22638
bioflow/neo4j_db/GraphDeclarator.py sha256=vq3q8C-sv0RJ0wmtNWtihQrYusMYV-D0uU2zempk1dw 812
bioflow/neo4j_db/db_io_routines.py sha256=l8qyo2yW6YdotlLtphxurLPhQLugh3s5uNljz84JKV0 15833
bioflow/utils/log_behavior.py sha256=GNYdF37dctJueNodAxptwjU36YCQnZPdHz0vYNIWybc 3886
bioflow/utils/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
bioflow/utils/remap_IDs.py sha256=-kQgDvuFXp0_LM1VPYdu31PjO_p5xZbrLYz9qlsf5PI 2605
bioflow/utils/top_level.py sha256=Dysk-4HYLbZYH-BDUPyjUmlMEB1nR7Umzd2d0Mdb0I0 1390
bioflow/utils/dataviz.py sha256=Dw_pOVFdqRbd5ceEebELgsHdDQrCYBMVB8OpBkzIv8I 6195
bioflow/utils/io_routines.py sha256=sYxl9Y8nTyN97ALVZ73fMZrYQYtwOS_iQ-7tyODU9i8 2714
bioflow/utils/linalg_routines.py sha256=zTPkLk3n4ADnCIEFTf9PQcB5qKEs7YQSRarP8b2Wn6A 9268
bioflow/utils/gdfExportInterface.py sha256=w9sH50PD3Q1q7xhXX2ECiox_YDbgKkhg4ByIDAn9Tqk 5745
bioflow/utils/usage_ex-average_path_length.py sha256=9b7ch0vce6CPMfkE4rKFrhR5TGQvVOd7cDSTmg9GSeU 9377
bioflow/utils/general_utils/high_level_os_io.py sha256=ZxGGVPgHl0wIB9sJ263lcGkrmuOUdyNjyUGLxWBlaxQ 2074
bioflow/utils/general_utils/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
bioflow/utils/general_utils/internet_io.py sha256=LqeVjiT9ERn_AHsRAZz34Fi9Fv7Ihrkht4SlAOPGGlE 4960
bioflow/utils/general_utils/dict_like_configs_parser.py sha256=0anrHgzgX26Tju7QpXb2neh4xXkYsYCHgFkKlVBtqYY 1348
bioflow/utils/general_utils/useful_wrappers.py sha256=tlB_Ewg99dkMw3uihgCkPsc5nyvg4yg-vT8oHM0pVwQ 2241
bioflow/db_importers/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
bioflow/db_importers/phosphosite_importer.py sha256=cYqwHZiZ5VjDbw8GQpwdwDgDgBAbqsGJEa2udwzNxjA 2801
bioflow/db_importers/complex_importer.py sha256=kdswy2dU37tMCZQBbkm4YxLW7MzWxRxGNBSMPQEqE7c 2741
bioflow/db_importers/tf_importers.py sha256=wFlaCEYJhhAGGP-5jys7ERC9JZMxT0cLpGOOYGi9zV0 4391
bioflow/db_importers/go_and_uniprot_importer.py sha256=XSQClMMSVH3b3yvbMPV55xAI0edwJga35zXCcK6R_Rk 11574
bioflow/db_importers/biogrid_importer.py sha256=vf3qM0lGKJJnzmir9095vXwmc-RRwNnZ3U9N1rxKFak 2878
bioflow/db_importers/import_main.py sha256=owrB-cNwT5y4os9_hQ1nbDGVS6CcrQlQJvQGTMFB5jc 2875
bioflow/db_importers/reactome_importer.py sha256=U1kAwSyqTvzRwUIVzWKbOz4jEh_XSoY4kCCCVVwcaRQ 19235
bioflow/db_importers/hint_importer.py sha256=hV2VaYVt1mGX1SNZLr0TMfLYQn4M-iVkMu8vCuej-Bk 1781
bioflow/annotation_network/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
bioflow/annotation_network/knowledge_access_analysis.py sha256=o1HAcDifW1h3VLpLiV_nAxzuIKP6SQDB97j13CHqm6c 23049
bioflow/annotation_network/additional.py sha256=C-FV6k1LRckECVtfGTdPOMnE89WoN0wv1I06WjgPKts 3199
bioflow/annotation_network/BioKnowledgeInterface.py sha256=lcYpaJKjbOV5V4bahNi7E7mhKNqWMmxNXQcukBdouJ0 43118
BioFlow-0.2.3.dist-info/WHEEL sha256=54bVun1KfEBTJ68SHUmbxNPj80VxlQ0sHi4gZdGZXEY 92
BioFlow-0.2.3.dist-info/DESCRIPTION.rst sha256=uBEagxuQbFx-HsUc0uBa9oknObQZ6Ih5mHqLmeqk7UY 10967
BioFlow-0.2.3.dist-info/RECORD
BioFlow-0.2.3.dist-info/METADATA sha256=yUyugZNBKYjW_mw85O5kQSyvHSJEVBCUQlFN6xYtrGg 12692
BioFlow-0.2.3.dist-info/top_level.txt sha256=S19dZno88Q053cgdUOii1TSUvhPdpUVSKaQ7OmuNldU 18
BioFlow-0.2.3.dist-info/metadata.json sha256=qx68Pugmn2k-rAn6VbZ0StAcswfqEHbnJtSxB0UhYNY 1692
BioFlow-0.2.3.dist-info/entry_points.txt sha256=4ZkWa7T1AnOOjNGxGguKWgW6uKlZXH4mT8BUImqzPgM 58
unittests/__init__.py sha256=UBg5x0WKzk6VgDXAnnNWYwm_gHWrucoZWUBbW4r_cmU 22
unittests/TestAll.py sha256=L8zcC44GpB8CoIspdgDRQ-nt-xeOMkBIrAabSWn6-Ek 1052
unittests/ParserTester.py sha256=JpeogjjKNcX3I6YK2nYhh_Niiu_Mt_t6tZXCfkJ8ciE 7177
unittests/PreProcessingTester.py sha256=8lDHl_2YvSLqeK_ZoUq7pP1qAnKaiS-OWBbLd8k1z0M 2505
unittests/ConductionTester.py sha256=3WrNQ46qBE8L4_CLvuERJ5-cApE0ysKap41WT-VNsAc 4261
unittests/LoggerTester.py sha256=w7oj1EoHCfNbEhcnSITgJMjJCXi86Sq7-F59sRBts3A 1796
unittests/UtilitiesTester.py sha256=Wx3tLtKbUSOZX1X9okWFEtj6jBjlyx3s-Ij0EcBJACQ 3979
unittests/Mocks/DB_IO_Mocks.py sha256=cmWlxPke59UoQnC6W_ey1DPU8dy0TyQCDH60sH3RBZ0 302
unittests/Mocks/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0

top_level.txt

bioflow
unittests

entry_points.txt

bioflow = bioflow.cli:main