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bp-quant

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0.5.2 bp_quant-0.5.2-py3-none-any.whl

Wheel Details

Project: bp-quant
Version: 0.5.2
Filename: bp_quant-0.5.2-py3-none-any.whl
Download: [link]
Size: 20350
MD5: a305b4a89744432ad075d4c5f878935a
SHA256: 92274da6c505d0dfde402856003fdc27cb4f0e335d665ae42bdbc37b43ee11a5
Uploaded: 2023-12-06 11:09:58 +0000

dist-info

METADATA · WHEEL · RECORD · top_level.txt · entry_points.txt

METADATA

Metadata-Version: 2.1
Name: bp-quant
Version: 0.5.2
Summary: Quantification of reads at defined positions to verify custom input sequences. Given a gene fusion or splicing junction of interest, this tool can quantify RNA-seq reads supporting the breakpoint (or splice junction) by quantifying reads that map to the breakpoint (junction reads) and read pairs that span the breakpoint (spanning pairs).
Author-Email: TRON - Translational Oncology at the University Medical Center of the Johannes Gutenberg University Mainz <patrick.sorn[at]tron-mainz.de>
Maintainer-Email: Patrick Sorn <patrick.sorn[at]tron-mainz.de>, Jonas Ibn-Salem <jonas.ibn-salem[at]tron-mainz.de>, Franziska Lang <franziska.lang[at]tron-mainz.de>
Project-Url: Homepage, https://github.com/tron-bioinformatics/easyquant
Classifier: Development Status :: 4 - Beta
Classifier: Intended Audience :: Healthcare Industry
Classifier: Intended Audience :: Science/Research
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: Programming Language :: Python :: 3.7
Classifier: Programming Language :: Python :: 3.8
Classifier: Programming Language :: Python :: 3.9
Classifier: Programming Language :: Python :: 3.10
Classifier: Programming Language :: Python :: 3 :: Only
Classifier: License :: OSI Approved :: MIT License
Classifier: Operating System :: Unix
Requires-Python: >=3.7
Requires-Dist: pysam (==0.21.0)
Requires-Dist: matplotlib (==3.5.2)
Requires-Dist: biopython (==1.81)
Description-Content-Type: text/markdown
License-File: LICENSE
[Description omitted; length: 9145 characters]

WHEEL

Wheel-Version: 1.0
Generator: bdist_wheel (0.42.0)
Root-Is-Purelib: true
Tag: py3-none-any

RECORD

Path Digest Size
bp_quant/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
bp_quant/aligning.py sha256=HX2Nl5k2A0JEFXhZvO10Z4-r5SsHOjRi-GUYQ5Zkxfo 4215
bp_quant/command_line.py sha256=pPXkIAt9iC8mBspiwXmvI7trtSl43qZFo9lY79nzO_M 2096
bp_quant/csv_to_fasta.py sha256=BpRXMK5QSSeZLEuajzlOVq07SLRVFgCCAUDLJ92vW2k 1477
bp_quant/indexing.py sha256=Uug-YjI-9EgXeB6U9Of1vAeUOs8LiDQOb5myputaWo0 2612
bp_quant/io_methods.py sha256=qKhlZWVaNTGX30BJA0cvzc6YDAC9SF619tiosgmsA78 1676
bp_quant/pipeline.py sha256=WMGDze1LBxEGlcOU5RlY6GIbu5fjtNYLwjbHK6QuMpg 12625
bp_quant/plot_reads.py sha256=9npHk_ZqV7i8Wbu4SDikmZ3JywnYPLOecuPa8txFJW8 4462
bp_quant/requantify.py sha256=VtzzZzTkK5IFwzhv09DHWDa749iJr_IumzwdA7thfI4 19421
bp_quant/version.py sha256=4tw2vh-iYBUgDpuVbMzzYPA_ZAeD1S1E_djsITiug0Y 74
bp_quant-0.5.2.dist-info/LICENSE sha256=USnChcRZjRVQ9vIDlP2ad2HGKw3t6zwaG6_qvienYNQ 1061
bp_quant-0.5.2.dist-info/METADATA sha256=jOQEXSIuKM9wLNcJIQNCEFV9B-ld81kSZUaA3aFPU1U 10659
bp_quant-0.5.2.dist-info/WHEEL sha256=oiQVh_5PnQM0E3gPdiz09WCNmwiHDMaGer_elqB3coM 92
bp_quant-0.5.2.dist-info/entry_points.txt sha256=Rn4uUZ6D2a4PvLm_X542LcHG6b5Gf8pOwwDxXccUTpc 64
bp_quant-0.5.2.dist-info/top_level.txt sha256=9-06KYqGkQ60K_s54aF26iaw659A8Z7XVzVKVYKY55s 9
bp_quant-0.5.2.dist-info/RECORD — —

top_level.txt

bp_quant

entry_points.txt

[console_scripts]
bp_quant = bp_quant.command_line:bp_quant_cli