callingcardstools

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1.5.2 callingcardstools-1.5.2-py3-none-any.whl

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Project: callingcardstools
Version: 1.5.2
Filename: callingcardstools-1.5.2-py3-none-any.whl
Download: [link]
Size: 93967
MD5: fd10a12ce8024529e011029133faaf5b
SHA256: 2a0442318c980461e806904818cde56ddba3b941f4fe319e979639bc554f3e1b
Uploaded: 2024-03-21 19:15:20 +0000

dist-info

METADATA

Metadata-Version: 2.1
Name: callingCardsTools
Version: 1.5.2
Summary: A collection of objects and functions to work with calling cards sequencing tools
Author: chase mateusiak
Author-Email: chase.mateusiak[at]gmail.com
Home-Page: https://cmatkhan.github.io/callingCardsTools/
Project-Url: Documentation, https://cmatkhan.github.io/callingCardsTools/
Project-Url: Repository, https://github.com/cmatKhan/callingCardsTools
License: MIT
Classifier: License :: OSI Approved :: MIT License
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.9
Classifier: Programming Language :: Python :: 3.10
Classifier: Programming Language :: Python :: 3.11
Classifier: Programming Language :: Python :: 3.12
Requires-Python: >=3.9
Requires-Dist: biopython (<2.0,>=1.81)
Requires-Dist: edlib (<2.0.0,>=1.3.9)
Requires-Dist: intervaltree (<4.0.0,>=3.1.0)
Requires-Dist: numpy (<2.0.0,>=1.24.3)
Requires-Dist: pandas (<2.0.0,>=1.5.3)
Requires-Dist: pyranges (<0.0.130,>=0.0.129)
Requires-Dist: pysam (<0.20.0,>=0.19.1)
Requires-Dist: scipy (<2.0.0,>=1.11.4)
Description-Content-Type: text/markdown
[Description omitted; length: 2688 characters]

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entry_points.txt

callingcardstools = callingcardstools:__main__.main