casanovo

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4.1.0 casanovo-4.1.0-py3-none-any.whl

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Project: casanovo
Version: 4.1.0
Filename: casanovo-4.1.0-py3-none-any.whl
Download: [link]
Size: 58100
MD5: 399d8098cfdc72b6aaadef6c90b9d033
SHA256: a5054f872abfc01f63c0d355957cd9833e5eb21cd01536d7e5e5661606c556c8
Uploaded: 2024-02-16 08:34:55 +0000

dist-info

METADATA

Metadata-Version: 2.1
Name: casanovo
Version: 4.1.0
Summary: De novo mass spectrometry peptide sequencing with a transformer model
Author-Email: Melih Yilmaz <melih[at]cs.washington.edu>, "William E. Fondrie" <fondriew[at]gmail.com>, Wout Bittremieux <wout.bittremieux[at]uantwerpen.be>
Project-Url: Homepage, https://github.com/Noble-Lab/casanovo
Project-Url: Documentation, https://casanovo.readthedocs.io
Project-Url: Bug Tracker, https://github.com/Noble-Lab/casanovo/issues
Project-Url: Discussion Board, https://github.com/Noble-Lab/casanovo/discussions
License: Apache 2.0
Classifier: Programming Language :: Python :: 3
Classifier: License :: OSI Approved :: Apache Software License
Classifier: Operating System :: OS Independent
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
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Provides-Extra: dev
Provides-Extra: docs
Description-Content-Type: text/markdown
License-File: LICENSE
[Description omitted; length: 989 characters]

WHEEL

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top_level.txt

casanovo
dist
docs
tests

entry_points.txt

casanovo = casanovo.casanovo:main