Path |
Digest |
Size |
cogent3/.DS_Store |
sha256=IuW7eCd7lMB2vNc9zuW5kedtH2ti4LnAX0l1IXUF7ro
|
6148 |
cogent3/__init__.py |
sha256=zd9dcmbWeQTOR4wXHL4iWVUsKtGf-acbhf-aLUL5jgs
|
19949 |
cogent3/_version.py |
sha256=NZg0BpZayOJKXBlJpRV2tZStr9c8UI5MmmUkeQhp9_A
|
79 |
cogent3/align/__init__.py |
sha256=zx6Noe6xffYzQaQAWfHr941OCsetk6na9LBVvzO2qqs
|
356 |
cogent3/align/align.py |
sha256=39Wj4Bx8ng4o7eqiw20lizwca8qDOkzUH7AonuNVL98
|
2806 |
cogent3/align/dp_calculation.py |
sha256=QOFs1BsIe3P1m99eTAjBkld7IwHIek8GaaTv2b9vzC0
|
5830 |
cogent3/align/indel_model.py |
sha256=wYcqFx_cstscJWEaf2qAnpRvwuhYsG327gytTtk5wGU
|
3553 |
cogent3/align/indel_positions.py |
sha256=GPpFhd-4UlyYFRsW3rQNssnOvVRfJqrQgLe_Fug5KGU
|
7818 |
cogent3/align/pairwise.py |
sha256=EBnnu163iGeS5Q6zaj704gQAcqsUAP3FF8NlP6r0cF0
|
38922 |
cogent3/align/pairwise_pogs_numba.py |
sha256=p9Ahe7Iv0kfwYpkxhfYIprmCzcbLmLKRnu5nUYLAnAU
|
11105 |
cogent3/align/pairwise_seqs_numba.py |
sha256=VmAX8gO_olhTV_3a9H8RnIbeAzblCJM16PgIYM-bBak
|
8909 |
cogent3/align/progressive.py |
sha256=SxjOPgepY5MF3cSQ47L4VGMzbv6sEBkOkVXUJrPqIPY
|
6614 |
cogent3/align/pycompare.py |
sha256=s5njVZjIuozughNQ9wGNd-COdnHsCr7agO4UH_Pet28
|
17204 |
cogent3/align/traceback.py |
sha256=AqxjgRyPahaxP6zxCbm7CvSEU4Tnd15DwMd2MzynLXI
|
2596 |
cogent3/app/__init__.py |
sha256=HLZ62xDlvNOYN671-7SVI1yP5p36bRA8hzYJI29SkvI
|
6893 |
cogent3/app/align.py |
sha256=488KNRAcTz1xWOIe_nfwholboCstUPyx8mLIEJO7SW8
|
27067 |
cogent3/app/composable.py |
sha256=t2ZlAQypD5Y5vzwUZVqGdEwXhXfceluhmwywGiT04dc
|
27375 |
cogent3/app/data_store.py |
sha256=Hs4IJDb1sCFSFmo41KdopjCewo2iMiK179lwNQLJP_4
|
27448 |
cogent3/app/dist.py |
sha256=NrgJ7a9jUCZCTfD-H6sa9Q2vzudkjxNQPOMP7v70uas
|
10820 |
cogent3/app/evo.py |
sha256=RP3gXK22yFDtcyKz038So6I1Q4AraVDx8kVYkRlRfqM
|
38251 |
cogent3/app/io.py |
sha256=IkSh9lv923rwL0jAA9D_IiSYJN75ElLbeVBbUwqO5bA
|
19048 |
cogent3/app/result.py |
sha256=DWkfBCoeJ19DsR2Mz4zEIcd-888inmEPcN30Cqj7Koo
|
19691 |
cogent3/app/sample.py |
sha256=06cw7vzn1Wih5mqXz31D0cXyg2XIPGgaXH7-Go_gPoQ
|
27868 |
cogent3/app/sqlite_data_store.py |
sha256=O4W3DaK8BKoqB-O6LiYrvsm5qQ7CwflK24DagOtVRXY
|
14587 |
cogent3/app/translate.py |
sha256=X9oLaIJiakHPhFEf7T-ABGCKdxtPuKE9NsXOQhDnfUI
|
8211 |
cogent3/app/tree.py |
sha256=474quoSNUOMvPC2pFMhzqZMYxi3c2JMZNO6QfpNxzco
|
4704 |
cogent3/app/typing.py |
sha256=XPsEgFzqK-YmoxXPBnGzNwKzL6cyfPDR9y8Dg6oEAaM
|
4330 |
cogent3/cluster/UPGMA.py |
sha256=f7E-70qrW9PgKBrUU3BBllGsPXUzIc-hfudcAYvhU6w
|
5615 |
cogent3/cluster/__init__.py |
sha256=1u0l2SIHwmcG5iSyYQNKFW0ygz_Cw0rn9kNXJKaZbxU
|
89 |
cogent3/core/__init__.py |
sha256=Qy-Zgard4zsW9iq_i7nKpqCndoFi3Y9l5Rf8hTo3S-s
|
194 |
cogent3/core/alignment.py |
sha256=8SHGs4HQfJ48QxRpvBLnGdQP8yFfrKYIUS5AQwPRJc4
|
194320 |
cogent3/core/alignment.py.orig |
sha256=6u9YPJrXyTNHVnxyXsjfwoGE1Iq2Zcsa6DMDr0LKuw0
|
194280 |
cogent3/core/alignment.py.rej |
sha256=QSq9gEzk5VLirvL07YeMjpgaPlXDHQGQbUhipVcrvGQ
|
647 |
cogent3/core/alphabet.py |
sha256=L65EsibEmJWzlduRyt2S95ajApB-KQBYp38YT03jez0
|
27850 |
cogent3/core/annotation.py |
sha256=7GL5vBV3N6HOrUaPxibZ2PR7xdQ9IjIPN8PnULZweYU
|
8059 |
cogent3/core/annotation_db.py |
sha256=rwduzO1CXiuoCGdzO6kOET8osBE9DsnmMRbAZiMCuWM
|
53274 |
cogent3/core/genetic_code.py |
sha256=6banPT6KirszPunkb9D38YLSa8pGxpZ9WRWMb2wzk_w
|
19877 |
cogent3/core/info.py |
sha256=R67nTtW5EaWufMMYm1lAlh5WcllmuEVN72x4jRSfqLQ
|
5569 |
cogent3/core/location.py |
sha256=iATGGzQX2-1GMcoy0MO47h8ezSxoijnLR0GgTi9tr38
|
36096 |
cogent3/core/location.py.orig |
sha256=iATGGzQX2-1GMcoy0MO47h8ezSxoijnLR0GgTi9tr38
|
36096 |
cogent3/core/location.py.rej |
sha256=oKUQI4B3AUUi--cag8PHas1DdfAdXhbOz41CwWZZbf0
|
285 |
cogent3/core/moltype.py |
sha256=4vqpqHKZLs9fWUiILAnGmzlCRXzE5HvkSc8SNBIX--M
|
48962 |
cogent3/core/profile.py |
sha256=0fpqtl4xXlTbqh_ggz9R5mQL_1DvuJwcoh53WYlexqw
|
18041 |
cogent3/core/sequence.py |
sha256=OMhZaA6YI_LFGb_GYT599GpU__hkRiXHWmR6MahsL-Q
|
102820 |
cogent3/core/sequence.py.rej |
sha256=e7KObcQnZAflbenPJp49HNlMepABv0MjdylHgAEvsPI
|
379 |
cogent3/core/tree.py |
sha256=SNnKxLwUJQP9glx16tVfvuHfD8qbTSF9C-ePy3tqsHU
|
84620 |
cogent3/data/__init__.py |
sha256=kZ-8sI9o7Tzg26WC3WGCe-1dj-b9BA0Qj2t6diK1kGI
|
71 |
cogent3/data/energy_params.py |
sha256=2kFd88KPmRX5jAYYxHDHHreg4YzDMaa33cPhFmrV8ko
|
3007 |
cogent3/data/molecular_weight.py |
sha256=CrvbgzxW_Rnlnh05q17sdiqG4Iem4SyPFmXZ_sOoe9A
|
1583 |
cogent3/draw/__init__.py |
sha256=MZvP6D4O63wnwFWEtvJPs3-ItkSwiZmPOdFmTcgUAhs
|
89 |
cogent3/draw/dendrogram.py |
sha256=7EnB48heOlbvwKyWLhaoIqKiXJGtV-7VNZYGsV0mO5E
|
30898 |
cogent3/draw/dotplot.py |
sha256=_4Dssq80V2PM7S08DZIcni9LXscsVG37LPevLRm6_Rs
|
8404 |
cogent3/draw/drawable.py |
sha256=MYaLdG7Rc4EypIbMwxVN5fZbOHshl0vUeJDqJCYYbqw
|
24792 |
cogent3/draw/letter.py |
sha256=2bUsGvxY3H2TMMN0pbNwYgGBCEgSOP_sFwWPMhxOiQg
|
48923 |
cogent3/draw/logo.py |
sha256=88B-j-J7KgP7xDLi07VL_mQ408HMmkjqRTytDaB8pWc
|
4017 |
cogent3/evolve/__init__.py |
sha256=17CqJYb8-gOW1QmxZ8VAK99RsaOZr7L5wwaCRykVtHg
|
330 |
cogent3/evolve/best_likelihood.py |
sha256=OZ3t5-ZEr53TdjcBfO0_Em2D2-LDrYadUMp1DpwCPz8
|
4478 |
cogent3/evolve/bootstrap.py |
sha256=yOqM-xj2mzpjaswdfd5c0vKIoECncDbBKIg8SU3oXG4
|
6756 |
cogent3/evolve/coevolution.py |
sha256=RhrVlFdesQhtFGW6_WZkaLIlotIbCG_w85a4LFp-QSA
|
94798 |
cogent3/evolve/discrete_markov.py |
sha256=B2WZMCwk6m2y90E5szSIQp33gJx-HlnWjsotJQ6wo7s
|
3230 |
cogent3/evolve/distance.py |
sha256=sekbO4gVNBOz5XiI2UFPsXRzRs2DmuKbYsk91ZGyBII
|
13023 |
cogent3/evolve/fast_distance.py |
sha256=jDQIoFyoZ-s4Uxc0p9cgrrTDMKZFAxrp-bwAEI9zuDQ
|
26423 |
cogent3/evolve/likelihood_calculation.py |
sha256=8T13S9YkOJIrQwsf9rGVvtF1nN4jljJTtNNrMEokptk
|
9635 |
cogent3/evolve/likelihood_function.py |
sha256=PaGm8eK6Z7tx05Cd9lQNMNxpV9kS3DbvaSLtF91Lkfk
|
42278 |
cogent3/evolve/likelihood_tree.py |
sha256=t3EBKPJGu5Ey30li0OuuU388NIvFLjBf6yBIWRADM8g
|
10952 |
cogent3/evolve/likelihood_tree_numba.py |
sha256=0fDywGfQauPKSaOjKuD9SUw9tqD60byCQqfEUoJZwcc
|
1317 |
cogent3/evolve/models.py |
sha256=ICcwv22nA2fyqH-JwFT537VDmBmCBTt1MQNH4OiRAac
|
65605 |
cogent3/evolve/motif_prob_model.py |
sha256=FMezDqWW7ixUCrePKgivI_G1ffiJrq-AqSSmrowtoeQ
|
11754 |
cogent3/evolve/ns_substitution_model.py |
sha256=VxrVetYqyAeLuXOMwdiPIbj5rqUlTXuy9JWRjk22FzY
|
7154 |
cogent3/evolve/pairwise_distance_numba.py |
sha256=WnB1OByCXz6jNI7OQGFDSbnUmX8FogQuI_thgzHlNLs
|
601 |
cogent3/evolve/parameter_controller.py |
sha256=J5c9m_61UzWqhXCQEyxwiaAp5dCVRJR2nTRgiLK7AvY
|
20915 |
cogent3/evolve/predicate.py |
sha256=BlxU1ohXqt7ZqN0I5yj-pNcsp8_25OwfmDyMI3bKyAc
|
8929 |
cogent3/evolve/simulate.py |
sha256=c-_Qf-aXSyl4XliFexZDc2g8s7tTmXq0-PAlrVN8skg
|
4773 |
cogent3/evolve/solved_models.py |
sha256=0beddGjlfnKQ7HN1yHEFZ2Gn4vVTZkVbpqtw_y9D7qo
|
2197 |
cogent3/evolve/solved_models_numba.py |
sha256=ypAqZwOjRbe9TJFT08ufb1Y-yjYsdT8gJio3iPavUrU
|
1458 |
cogent3/evolve/substitution_calculation.py |
sha256=sH7IZhu18kEShCe5RaGBBRi48x4dBSA_gMbq-dAOy8M
|
2113 |
cogent3/evolve/substitution_model.py |
sha256=lpdKNpZq5QUfd6hW5_jEIKGABU8xri5p6SvllTl-lQE
|
39070 |
cogent3/format/__init__.py |
sha256=B_xN5AdW-9eR6Cm4nxRp305KZkW-YxhQ2sz67iibRO8
|
341 |
cogent3/format/alignment.py |
sha256=iYLdPemBIuPbWPsdicxmN6G58tcir_svSgue4SxdO2M
|
1587 |
cogent3/format/bedgraph.py |
sha256=71TD5fvmEzivT8fc4mGWobq-ZoGgilgMJKJ8tQsaaus
|
4819 |
cogent3/format/clustal.py |
sha256=j-Py8csshM4xVqjOI4kwxhuwtKTPT-WwCmgkUslUmFE
|
1793 |
cogent3/format/fasta.py |
sha256=Xh3B8XiWoe9ZOMRwQRPL933I0gZYAgAIgISik3gUscM
|
1407 |
cogent3/format/gde.py |
sha256=2YSvojxUaQKhWGxwxqXdbAO3dW8tMA7AWEYnPnaTVfY
|
1377 |
cogent3/format/nexus.py |
sha256=SwSBXXpxJS0Uo_LC5qszjkSFj-6NuRFGvrfUq48AStA
|
1066 |
cogent3/format/paml.py |
sha256=fWaoQ6raMAJchF-64IgzQeusAccfvV7Iqh9p9o0Xrzk
|
1453 |
cogent3/format/phylip.py |
sha256=GhjJQanNgJqSsFCUzk7scnAbPJ1uDRt3XEWj58tkOzw
|
1933 |
cogent3/format/table.py |
sha256=23TFrTLbyBpHxvlIaEloAtnMA8I3r5ybWCjTdtuRkJ4
|
31505 |
cogent3/format/util.py |
sha256=o9J-fvXn8kh9KQmJJeZpMQ_Quwbhk7uZIHhCe-6eLKE
|
2916 |
cogent3/maths/__init__.py |
sha256=TT9eZxbC_4P_UiRUkyid5dALB6mIGWPoklZoZ004w5c
|
290 |
cogent3/maths/distance_transform.py |
sha256=jEckuQVLeJyf6iha11z5WLRYU2IGrJMMBPyT10VQy-8
|
50816 |
cogent3/maths/geometry.py |
sha256=bca2NW0WiC8Zhfa0l8ZU0c32XFNfZqrjBAVOytdW6yM
|
6397 |
cogent3/maths/markov.py |
sha256=ZtdyYa3QFi8KQhZrqeAP1zo5vqYPUQEUbVWe4VoR6JU
|
6854 |
cogent3/maths/matrix_exponential_integration.py |
sha256=9ibp0--C5GTd3rBRg4ObkGreFxphSELMsUIGGBKXjsI
|
3142 |
cogent3/maths/matrix_exponentiation.py |
sha256=vp9YvFCVB_LLzePAJbG8NOP0KRYOV11VlQpJqkRn38s
|
4431 |
cogent3/maths/matrix_logarithm.py |
sha256=rufEJfpFRjBSa5HEOuybQQ06WqxHz4wNw-4Gdwpmqso
|
3595 |
cogent3/maths/measure.py |
sha256=Js_b8y1zYDBqc-oCYsgEwzE0vsx3is3vLGiuQGPuPl0
|
3836 |
cogent3/maths/optimisers.py |
sha256=NaIdn5oxBJ8AgyRo_QLesMKhw3Biol7AHIu-213v-Us
|
8088 |
cogent3/maths/period.py |
sha256=bvv9Ns0kCNlfUorgrTo4ZrxcJAvvdmqvCNHCo82nzXg
|
8934 |
cogent3/maths/period_numba.py |
sha256=OT5Sr3PYS5AMbRifNL_X1GonTjHV8RYZp1rGnqS9PBQ
|
1274 |
cogent3/maths/scipy_optimisers.py |
sha256=dcQ5KTWVDU_4xFXPzfFMLrQg1tGqwEJZfhJVpA_v0ho
|
3274 |
cogent3/maths/scipy_optimize.py |
sha256=BnI8bE_WWr-3EhsEx7NLFjOAzXP6T8tDBE9v2mVP5xI
|
16667 |
cogent3/maths/simannealingoptimiser.py |
sha256=LXdhJFt7855Z_Y6Ie-6klph5RasOs_-uiJFyH8wfiJM
|
9033 |
cogent3/maths/solve.py |
sha256=Rzjk79oCe_V3MYYegZ6rmda8xtzrRiA9pi6-moOBwKM
|
3872 |
cogent3/maths/util.py |
sha256=NwZpNv88aQFyK77TlgB7JKvatxNq2mc4IpUWUF8NNT8
|
7787 |
cogent3/maths/stats/__init__.py |
sha256=MBb_vcbKy3JnZqM0kVOmlxUWtI2hNo5qQeBlbdY3dCM
|
310 |
cogent3/maths/stats/contingency.py |
sha256=aGJAKFRSzzXCeUh8XZhDS9_OdD_24VBrZLD-5lEGzm4
|
13237 |
cogent3/maths/stats/distribution.py |
sha256=vbqGslwz1fLvYv6bUjjMTQAc61afVTNWJrkOvzWZkdw
|
10849 |
cogent3/maths/stats/information_criteria.py |
sha256=nKSP_rqsv7o61WrFv95OYeMmZp5CLaEt7coy2qo-G-g
|
835 |
cogent3/maths/stats/jackknife.py |
sha256=HrlbuBbt5PgSnzr2I7pBbmeSy7UYFVqtb1DF7krXxME
|
5914 |
cogent3/maths/stats/kendall.py |
sha256=8qHcTD9E5XcPDrWHksxE8GCNkA5D0nrZtnUEw83TVD0
|
3428 |
cogent3/maths/stats/ks.py |
sha256=dNMmBXrTOi1NqG6Z2Gf-K8GPoveEswYZjPo0fBamug0
|
3522 |
cogent3/maths/stats/number.py |
sha256=BrJVcs2-Bxv_8Su_zyAnLj8E2udBe5wW5yoPKNh1aEk
|
11454 |
cogent3/maths/stats/period.py |
sha256=SSqWXnXBR4GHFQbYpLj0Gz32wnVohtNXsDn88ZTwowU
|
6793 |
cogent3/maths/stats/special.py |
sha256=Q588RtqM92jD_3K79ZtwrxY-WMU0TOqoa9ExmxoC1pA
|
32807 |
cogent3/maths/stats/test.py |
sha256=Ezyw9DHu13I247arh_HJcjOLgNowM3EKAAXGB3IfB0I
|
62378 |
cogent3/parse/__init__.py |
sha256=bDTMG7ew_70mbBGfOqXpJGDy6pTgyPKgKMtVdhTW1w8
|
397 |
cogent3/parse/blast.py |
sha256=hY-z9zw8Pu5Q4lUvxkiBUZZ68qgwYHRAdStfJee-o1Q
|
11369 |
cogent3/parse/blast_xml.py |
sha256=znIpxMHrGPJl5LRZRjYivcP7qNicPl2IIXRTPgeI_WY
|
9705 |
cogent3/parse/cigar.py |
sha256=rEMiKmC2GUgnNaHNPnfXbR3IoxB1MtGeVf8CEnzpUys
|
4656 |
cogent3/parse/cisbp.py |
sha256=GthJjCDLRuD-0tp8GkaaY4W9gjBQfl6SsHm5C94KQNU
|
864 |
cogent3/parse/clustal.py |
sha256=-liVZdwZm3CpJBMBhttxAtnOSicqtqMcNMLi6e-k8A8
|
3143 |
cogent3/parse/cogent3_json.py |
sha256=gXh6mfYkz2u3vZSGmWNYo_tXTjfl6qO776urGFr1tj0
|
1381 |
cogent3/parse/dialign.py |
sha256=8wUP8NmjxEf56_llvqmqi22ojWMmpg_IgqZrQsDp8Q4
|
1895 |
cogent3/parse/ebi.py |
sha256=T30vL0sAdIeXEvd6zWaiKH4WgyV1rM1qB2PmkkO-NPw
|
58364 |
cogent3/parse/fasta.py |
sha256=Jw3UA2RpAHic1eqtRu2aZSPX-ZdB18S1uS_6ifCRav0
|
11295 |
cogent3/parse/gbseq.py |
sha256=PBF2syodWPpn5NVLiLbxeQkXG05XvvWwSAgpnmE9Voc
|
4175 |
cogent3/parse/gcg.py |
sha256=b5zqUUaG-aYz04krR8wr0TqSqx9EU-F7Y8xFOz3zPVA
|
1507 |
cogent3/parse/genbank.py |
sha256=6nHrV0U_JtCtgxVofuFTEka1-FowOugl4tOJaT8KUUI
|
20860 |
cogent3/parse/gff.py |
sha256=wU-m8lYnk72_DSwBQa1nxXCUIVWPQXHHORCiXQNtS8o
|
4549 |
cogent3/parse/greengenes.py |
sha256=T3b50udpzltSih-RRIIhcC6CVzC0KXLjvSgnpN-QFME
|
2567 |
cogent3/parse/jaspar.py |
sha256=DxWISCCCRb9ea5fpo8d-qZPczVnCYYbh1nX_4jNtfVk
|
991 |
cogent3/parse/locuslink.py |
sha256=CYb5ARXJhdCCAU3ii4-apv8ele04T918ZAdoB5dESpE
|
10246 |
cogent3/parse/ncbi_taxonomy.py |
sha256=-_bmcpUEw2jATKqCUE9FfC-mEF7_K6QjVjzIskeJY9k
|
8949 |
cogent3/parse/newick.py |
sha256=wjSSLM-60IPwXTmJ0vMsm_h6ycITOTChSwMXGyx3uok
|
7114 |
cogent3/parse/nexus.py |
sha256=vGh6z2HNm4T9hdkfCVmQ44IcssODMWEPOkiGUXRsVYQ
|
6953 |
cogent3/parse/paml.py |
sha256=H1qzxAZswDIJt33JLsCpeK9fFrHCl7L2Ef8IVda5mBM
|
785 |
cogent3/parse/paml_matrix.py |
sha256=QqQyKo36LhOmKdDK8WRQACVlGTI1kElJ0az9Jwo1S-k
|
1165 |
cogent3/parse/phylip.py |
sha256=YGh4_X1gZNJ7wsoqi2dULQQi1FLg-VqcuPtGsoHhe-c
|
3636 |
cogent3/parse/psl.py |
sha256=-4cv23HjtrWO2sywF_qQQJ-SOMaWJJDjH-PjNxOKpJE
|
1731 |
cogent3/parse/rdb.py |
sha256=a42nAH9Fls8298oIuDifT5StoPRHjpGofc6E4WswjBM
|
5043 |
cogent3/parse/record.py |
sha256=hV-ydYWGZBDoUnKuYQLqo-2a5oNeEEo5mWu6ltPj5XE
|
20157 |
cogent3/parse/record_finder.py |
sha256=HzX_uA4rXCpjFtT81zi05dwGEfEqslIGiOi3Hi___GI
|
6522 |
cogent3/parse/sequence.py |
sha256=g9emws2k9h1VPmxqY-3XeJuUVaCckFA7J0HgQzalkig
|
2614 |
cogent3/parse/table.py |
sha256=L1EPqaXDh1Jkjz7ZBnZnpM4j-XAJ9vf6dADynIMEaC4
|
4916 |
cogent3/parse/tinyseq.py |
sha256=IotIyFNR1fOVP0YaIRcjfF_Cc0eWT86BawZvrjiDjz4
|
2055 |
cogent3/parse/tree.py |
sha256=kgurOWAY-47f0UJXfQZX8JR3qb58nfBspqn1IQ12VBg
|
6487 |
cogent3/parse/tree_xml.py |
sha256=C2kJxnokJBVZTAQKyHcFqrd_8lbQ1z4qLE41UHQ1yAE
|
2379 |
cogent3/parse/unigene.py |
sha256=kUcoRw4Mc6MReeGuLo7mjkVvyMKaLNcu7rAHmS4HuU8
|
3990 |
cogent3/phylo/__init__.py |
sha256=hksSQwILfrDS9tlXYsWs2GHoh-ELdjbPnhzyKPpCxt8
|
118 |
cogent3/phylo/consensus.py |
sha256=axDRMrdSARbyz9v9J7xClWRpspWsE2Ue4EILOKYl5jA
|
10280 |
cogent3/phylo/least_squares.py |
sha256=OLWzEhWDTVRfG4xvNg7MPeLDPXoplzFXTX8CCwvyIW0
|
3076 |
cogent3/phylo/maximum_likelihood.py |
sha256=2lDxSGvgYfUVDW0tr4Tk7YRYusId-1e_L0VydWtrPWw
|
2268 |
cogent3/phylo/nj.py |
sha256=ktwv3coy6OtEIDZ-xWbG9C4DHMKONgM1bs662HGnZSI
|
9870 |
cogent3/phylo/tree_collection.py |
sha256=xXY7iqGI5gdlaJgs584L3nXcFpase4wtTJhy8N2ht5w
|
5147 |
cogent3/phylo/tree_distance.py |
sha256=POE3HiPg1rQTqnD9Mo4YWSN6uLYkRATMla6UOjHAMK0
|
9034 |
cogent3/phylo/tree_space.py |
sha256=2hXSLQtRSRE0PJUAGGkDde0e9FVBuHO-nD7U_RMYqNo
|
9575 |
cogent3/phylo/util.py |
sha256=PPgJ9H5cLEiQNGLwYmTqUao6Qzxwg2sJvSMHmFW33-Y
|
2489 |
cogent3/recalculation/__init__.py |
sha256=nlZavUa-j6od7Wdw4gvB13rWtcYDJGFNAcFR32pirZw
|
79 |
cogent3/recalculation/calculation.py |
sha256=VpKyNuD8DDk3K_80UrXIX4qKJFprtbXpduXwo9KIOTA
|
23032 |
cogent3/recalculation/definition.py |
sha256=1pDnd8i0JwDM5OOxTB3UK9GGGlBoKQRq-TXsaaQ_ocY
|
22557 |
cogent3/recalculation/scope.py |
sha256=8NynpnIRrUjzzz66KD03ejF0zz6-prz7_ipvUJqcL9I
|
30410 |
cogent3/recalculation/setting.py |
sha256=5UKkYc86HrRAgevPxWOKBbrY9StmFWwwAqCzvmM7M5M
|
2668 |
cogent3/util/__init__.py |
sha256=fHFVMDl4W2LxFYzy2xLOOspFL2YD9qEF_L7H009q2iI
|
233 |
cogent3/util/checkpointing.py |
sha256=gzrLRseQEF13B025PPMv-GBqjXgw9PlMauFVyzmAPGs
|
1210 |
cogent3/util/deserialise.py |
sha256=pjgaBGeWUJxYqUT7TWRur5AgMZw3935Phjgn9U1aK-c
|
11990 |
cogent3/util/dict_array.py |
sha256=Tdjjxc_jgaYqNx05ptjSINg_HtP9MUeBiL96K6M-u-s
|
19651 |
cogent3/util/io.py |
sha256=UAR80C9i6q6UnTPu7dCdVVpGofkefTAww9GlLICOvkc
|
10036 |
cogent3/util/misc.py |
sha256=GRhZKoVsRftS5WablyPhNdoKqR7UPNhOWF-Ehm4uz_k
|
35134 |
cogent3/util/parallel.py |
sha256=wEMuixtUULMERm03ydf3hKifExKiHPgH5ECBCI3TAWM
|
7328 |
cogent3/util/progress_display.py |
sha256=k3XUppId14s2JzvBr-RxNTvJEsr6vD7KZjOUoErw6Zo
|
6382 |
cogent3/util/recode_alignment.py |
sha256=fI4l0v-esTuiIiha5NEkfgDMduItZfL9Rpy3cG4snto
|
16202 |
cogent3/util/table.py |
sha256=ql-9xHDa4aQ3rUddEnEzP-10uw9FKSZ9G-K6TnOMOz4
|
70458 |
cogent3/util/transform.py |
sha256=j2Je8jubJxZfh1IOptd4YFBTJ349quE62dCk_VjC6ls
|
3387 |
cogent3/util/union_dict.py |
sha256=yTUUS8HEZjquEn691A3JXn_WC0nPP-d-a7rdyP_0YS4
|
3141 |
cogent3/util/warning.py |
sha256=_fFhg8kvEKfVqXse8iHncmtudDcwty6u4gh-GP7PbyU
|
7051 |
cogent3-2024.2.5a1.dist-info/LICENSE |
sha256=2I0GcprqDVbk12mGPYMbwx8d1pGwBbwynEiAOsKAqsA
|
1462 |
cogent3-2024.2.5a1.dist-info/WHEEL |
sha256=EZbGkh7Ie4PoZfRQ8I0ZuP9VklN_TvcZ6DSE5Uar4z4
|
81 |
cogent3-2024.2.5a1.dist-info/METADATA |
sha256=82M6SifrQy5uID3koTx0XgoK9L508HY1NulTF3i3OXE
|
11565 |
cogent3-2024.2.5a1.dist-info/RECORD |
— |
— |