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counhto

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1.1.0 counhto-1.1.0-py3-none-any.whl

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Project: counhto
Version: 1.1.0
Filename: counhto-1.1.0-py3-none-any.whl
Download: [link]
Size: 24911
MD5: 49dfca09dcc986ec713c8f396b058ad1
SHA256: ef8a167d0975d10d8a8d1f50c2db7cfa4a82de3b9efb79161b82bf485dd78857
Uploaded: 2023-04-07 16:19:26 +0000

dist-info

METADATA · WHEEL · RECORD · top_level.txt · entry_points.txt

METADATA

Metadata-Version: 2.1
Name: counhto
Version: 1.1.0
Summary: Python package for generating and demultiplexing hash tag oligo count matrices from cellranger output
Author-Email: Daniel Malzl <daniel[at]menchelab.com>
Project-Url: Homepage, https://github.com/dmalzl/counhto
License: MIT License Copyright (c) 2023 Daniel Malzl Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions: The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software. THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
Keywords: bioinformatics,single cell sequencing,sequencing,NGS,hashtag oligo counting,hashtag oligo demultiplexing,cellranger
Classifier: License :: OSI Approved :: MIT License
Classifier: Programming Language :: Python
Classifier: Programming Language :: Python :: 3
Requires-Python: >=3.10
Requires-Dist: pysam (>=0.20)
Requires-Dist: scipy (>=1.10)
Requires-Dist: pandas (>=1.5)
Requires-Dist: statsmodels (>=0.13)
Requires-Dist: scikit-learn (>=1.2)
Requires-Dist: numpy (>=1.23)
Description-Content-Type: text/markdown
License-File: LICENSE
[Description omitted; length: 2027 characters]

WHEEL

Wheel-Version: 1.0
Generator: bdist_wheel (0.40.0)
Root-Is-Purelib: true
Tag: py3-none-any

RECORD

Path Digest Size
counhto/__init__.py sha256=nOj52lOVuiE52jlJtXtUfkK7RCpDU5GBQYZmto79yno 169
counhto/combinatorics.py sha256=t6xSb94iNlt1s720csvyQPD59g88e9IOKiGWLThEBRU 2638
counhto/constants.py sha256=0PkF8t1wJ-641tig4BIImmNbvkwdckn3C63E1XGekHE 522
counhto/count.py sha256=daNyk149u-JjK5rH8QI8cTZVYe1eoPD_rdi6ff_agGg 3706
counhto/io.py sha256=s1jP1b_F4rvDxm-lRLtQTMQGMBApEwTZzlX3YFAiTtw 3803
counhto/jibes.py sha256=oUL_TcC2Nk1RYLPJIdiXlwsnGpcChIlBskE41b6o7n0 6059
counhto/jibes_core.py sha256=5FdS_kMLNgPN-YAsfA65gHnsqUyeo_QO3_lZLs-mNYY 22929
counhto/jibes_data.py sha256=x5dIQFiJXwpXEqJl3yRTg0T0S2YIsrroGhDdtgfsKIY 1618
counhto/main.py sha256=cXCVUk4-X3625v5gUYypX7XmDoN1F0h9tfxihHE4E6E 3860
counhto/marginal.py sha256=28935yikTADf2DeMeSX_UqbmgiJAG6MASxUcJwgOSok 2697
counhto/utils.py sha256=PuQ0QKvK3iuTCgoMbSAtsupMeVbHvbAHZIyAP_HLDuU 10614
counhto-1.1.0.dist-info/LICENSE sha256=-7JpUUk3s9c4P8Z1L2am211paOssGPMCBcti7y9As7w 1069
counhto-1.1.0.dist-info/METADATA sha256=0I_7CjE63XvtpIZnWfMiZ8pIdryWTMD_USIhc_SvhWY 4090
counhto-1.1.0.dist-info/WHEEL sha256=pkctZYzUS4AYVn6dJ-7367OJZivF2e8RA9b_ZBjif18 92
counhto-1.1.0.dist-info/entry_points.txt sha256=8hlgB-YonFPHLQRbDy65T1SRA1ARiXh9cGQMfULHbYk 46
counhto-1.1.0.dist-info/top_level.txt sha256=fqqTwj10T-ZBy6tAwEgHFfUz_X3vZq5Wc_qs74qNcH4 8
counhto-1.1.0.dist-info/RECORD — —

top_level.txt

counhto

entry_points.txt

[console_scripts]
counhto = counhto.main:main