Reverse Dependencies of cutadapt

The following projects have a declared dependency on cutadapt:

• anospp-analysis — ANOSPP data analysis
• apscale — Advanced Pipeline for Simple yet Comprehensive AnaLysEs of DNA metabarcoding data
• celescope — Single Cell Analysis Pipelines
• cutseq — Automatically cut adapter / barcode / UMI from NGS data
• dreem — DREEM solves RNA structure ensembles using chemical probing data
• DRUGseq-tools — Transcriptome Analysis Pipeline for DRUG-seq
• gbprocess-ngs — GBprocesS allows for the extraction of genomic inserts from NGS data for GBS experiments
• mbf-align — Alignment of high througput sequencing data
• mirge3 — Comprehensive analysis of small RNA sequencing Data
• pixelgen-pixelator — A command-line tool and library to process and analyze sequencing data from Molecular Pixelation (MPX) assays.
• process-fastq — This package will help process, merge and link fastq in user specified directory from manifest file
• pyim — Tool for identifying transposon insertions from targeted DNA-sequencing data.
• RNAlysis — RNAlysis is an analysis software for RNA sequencing data. RNAlysis can help to filter, visualize, explore, analyze, and share your data.
• seismic-rna — Structure Ensemble Inference by Sequencing, Mutation Identification, and Clustering of RNA (SEISMIC-RNA)
• seqalign — Manage sequence alignments
• singlecellmultiomics — Tools to deal with one or more measurements from single cells
• smap-haplotype-window — Haplotype-window is a SMAP component that performs haplotyping between pairs of borders defined in a reference genome.
• thapbi-pict — THAPBI Phytophthora ITS1 Classifier Tool (PICT).
• WangLab — Simple bioinformatic tools
• XICRA — Small RNAseq pipeline for paired-end reads