Reverse Dependencies of czifile

The following projects have a declared dependency on czifile:

• astroCAST — Package to analyze calcium fluorescence events in astrocytes
• aydin — Aydin - Denoising but chill
• cgohlke — Install all packages by cgohlke
• cziconvert — Convert czi files to images and/or video.
• czitools — Tools to simplify reading CZI (Carl Zeiss Image) meta and pixel data
• dcclab — A Python library to read, transform, manipulate images and manage databases
• dendritic-arborization-tracer — A tool to segment dendrites
• epyseg — A deep learning based tool to segment epithelial tissues. The epyseg GUI can be uesd to build, train or run custom networks
• findmycells — An end-to-end bioimage analysis pipeline with state-of-the-art tools for non-coding experts
• fraplib — no summary
• impose — Fit and superimpose shapes from different imaging modalities
• koopa — Workflow for analysis of cellular microscopy data.
• lfdfiles — Laboratory for Fluorescence Dynamics (LFD) file formats
• multireg — Registration of 3D multiplex images with one common chanel
• napari-3dtimereg — Registration of 3D movies applied to all channels
• napari-bacseg — Bacterial segmentation and analysis platform than can inport/export files in multiple formats. Integrating many tools such as Cellpose, ColiCoords, Oufti/MicrobeTracker.
• napari-czifile — A napari plugin for reading files via czifile
• napari-czifile2 — Carl Zeiss Image (.czi) file support for napari
• napari-findaureus — Locate bacteria in CLSM obtained infected bone tissue images
• napari-imsmicrolink — Plugin to perform IMS to microscopy registration using laser ablation marks.
• ndbioimage — Bio image reading, metadata and some affine registration.
• numena — Image Processing and Analysis toolbox package
• PartSeg — PartSeg is python GUI and set of napari plugins for bio imaging analysis especially nucleus analysis,
• phenotastic — 3D plant phenotyping.
• pilyso-io — pilyso - image reading library
• pssr — Point-Scanning Super-Resolution
• pygpseq — A GPSeq image analysis package
• simfcs — Install requirements for the SimFCS software
• tllab-common — Common code for the Lenstra lab.
• wsidicomizer — Tool for reading WSI files from proprietary formats and optionally convert them to to DICOM
• wsireg — python package for registering multimodal whole slide microscopy images
• zisraw — The zisraw package is deprecated. Please use the czifile package instead.