Reverse Dependencies of edlib

The following projects have a declared dependency on edlib:

• amptk — AMPtk: amplicon tool kit
• auditnlg — Auditing Generative AI Lanugage Modeling for Trustworthiness
• biobookshelf — a collection of python scripts and functions for exploratory analysis of bioinformatic data in Python
• bits-yoshi — miscellaneous BioInformatics ToolS
• callingcardstools — A collection of objects and functions to work with calling cards sequencing tools
• Circle-Map — Circular DNA analysis tools
• CIRI-long — circular RNA identification from Nanopore
• crispector2 — CRISPECTOR2 - Genome Editing Analysis Tool, with allele extension
• dt4dds — dt4dds is a Python package providing a customizable, digital representation of the widely-used DNA data storage workflow involving array synthesis, PCR, Aging, and Sequencing-By-Synthesis. By modelling each part of such user-defined workflows with fully customizable experimental parameters, dt4dds enables data-driven experimental design and rational design of redundancy. dt4dds also includes a pipeline for comprehensively analyzing errors in sequencing data, both from experiments and simulation.
• fbilr — Find barcode in long reads
• findpapers — Findpapers is an application that helps researchers who are looking for references for their work.
• gapmm2 — gapmm2: gapped alignment using minimap2
• isocomp — no summary
• IsoCon — Pipeline for obtaining non-redundant haplotype specific transcript isoforms using PacBio IsoSeq reads.
• isONcorrect — De novo error-correction of long-read transcriptome reads
• isONform — De novo construction of isoforms from long-read data
• jupyter-ascending-patched — no summary
• kwola — Kwola makes an AI powered tool for finding bugs in software
• nanoprep-ffm — A fully-equipped, fast, and memory-efficient pre-processor for ONT transcriptomic data
• oireachtas-data — Oireachtas debate data
• parseq-analyze — parseq is a python package for the analysis of parSEQ sequencing data
• pgx-variant-tools — Tools for working with variants.
• pyaliner — A library for comparing sequential data
• pytorch-cortex — A modular architecture for deep learning systems.
• qaeval — A package for evaluating the content of summaries through question-answering
• readtagger — Tags reads in a BAM file based on other BAM files.
• rrequested-demultiplex — rrequested-demultiplex: A versatile package to preprocess raw basecalled reads with quality and size filtering and ex-novo demultiplexing
• sniffles — A fast structural variation caller for long-read sequencing data
• string-analysis-MatheusAD — String Stream Analysis
• svim — A structural variant caller for long reads.
• svim-asm — A structural variant caller for genome-genome alignments.
• teklia-nerval — Tool to evaluate NER on noisy text.
• text-alignment-tool — A tool for performing complex text alignment processes.
• Truvari — Structural variant comparison tool for VCFs
• wgscovplot — Create interactive comparative sequencing coverage plots from virus sequencing data.