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genepi

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2.0.10 genepi-2.0.10-py3-none-any.whl

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Project: genepi
Version: 2.0.10
Filename: genepi-2.0.10-py3-none-any.whl
Download: [link]
Size: 470443
MD5: b109f1198244ba0f783b83c69da7c41f
SHA256: cdde22637c961aaaf734ff9a66ff074b24e39d923426b705561591b03f314660
Uploaded: 2020-08-04 06:09:59 +0000

dist-info

METADATA · WHEEL · RECORD · top_level.txt · entry_points.txt

METADATA

Metadata-Version: 2.1
Name: genepi
Version: 2.0.10
Summary: A package for detecting epsitasis by machine learning
Author: Chester (Yu-Chuan Chang)
Author-Email: chester75321[at]gmail.com
Home-Page: https://github.com/Chester75321/GenEpi
Project-Url: Source Code, https://github.com/Chester75321/GenEpi
Project-Url: Documentation, https://genepi.readthedocs.io/en/latest/
Project-Url: Bug Tracker, https://github.com/Chester75321/GenEpi/issues
License: MIT
Keywords: epistasis,SNP-SNP interactions,GWAS
Classifier: Development Status :: 3 - Alpha
Classifier: Intended Audience :: Science/Research
Classifier: License :: OSI Approved :: MIT License
Classifier: Programming Language :: Python :: 3
Classifier: Programming Language :: Python :: 3.7
Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
Classifier: Topic :: Scientific/Engineering :: Artificial Intelligence
Requires-Python: >=3.7
Requires-Dist: pymysql (>=0.8.0)
Requires-Dist: numpy (>=1.13.0)
Requires-Dist: scipy (>=0.19.0)
Requires-Dist: psutil (>=4.3.0)
Requires-Dist: scikit-learn (==0.21.2)
Requires-Dist: matplotlib (>=3.1.1)
Requires-Dist: pandas (>=0.25.2)
Requires-Dist: seaborn (>=0.9.0)
Requires-Dist: PyQt5 (==5.14.0)
Description-Content-Type: text/markdown
[Description omitted; length: 7096 characters]

WHEEL

Wheel-Version: 1.0
Generator: bdist_wheel (0.34.2)
Root-Is-Purelib: true
Tag: py3-none-any

RECORD

Path Digest Size
genepi/AppGenEpi.py sha256=aU0kD9n-ktvzGAoXtR8BP3G42dr2CBXopis-SjkKcV0 29938
genepi/GenEpi.py sha256=7u17vS_EbluePL7QgeQ_QDnbQxJ3GbW9tVLEWBDgn0A 12918
genepi/UCSCGenomeDatabase.txt sha256=6KQCXVsR30B328lsdHXi5kuY2Btnd7Y62zaSi0Csr7M 668889
genepi/__init__.py sha256=51Gq0U85soslo1VAwziq4oiDs1PdyViW739qAhB1KfU 1884
genepi/step0_correctMissingID.py sha256=Jkfcwda1MyUkHUle_Np-YgwIvSQZYSPu24E6l9ezGmE 1580
genepi/step1_downloadUCSCDB.py sha256=PMfQ-Y7PEbC3xNFER3HEf8uFv4OH-WWCe8PaYp8cF0s 2417
genepi/step2_estimateLD.py sha256=xHjX-40DDUQR7sRqnXeVF9hv_wPttlxuiHsRaiggQkk 10441
genepi/step3_splitByGene.py sha256=6jj5dEi5gMc8CsybIKRcqAOLtWsBd49GqjUQuUzb6NU 8024
genepi/step4_singleGeneEpistasis_Lasso.py sha256=nacSWq0tSOIehI5509MDzoVM6hzLXpatWACJ2BZAQi0 17503
genepi/step4_singleGeneEpistasis_Logistic.py sha256=PV8VQTiUQM9kzn87RprypLrZEFDP4EX9kNXN2b3_qSA 18618
genepi/step5_crossGeneEpistasis_Lasso.py sha256=X2q0QuI5bM5987RTanwNToxHeh2F44uZfrKivFYtDJ8 13915
genepi/step5_crossGeneEpistasis_Logistic.py sha256=jl5jU_C_S-xHCfQd1Xq6OuLgzs14XxbjALfSE49CE8E 21128
genepi/step6_ensembleWithCovariates.py sha256=T5907YbV8DP54KNfg3tC0E5sL8N_GxxhrziJJiR12ro 10047
genepi/step7_validateByIsolatedData.py sha256=ilR8FIMX27_gzz5mgNDUWFNydGjGoZodKXM_iFFqfYU 13558
genepi/example/example.py sha256=vMfL8UNjkETMSecRKAIEacKrMRPZ8Xx8KpDOCJEGuPA 2070
genepi/example/sample.csv sha256=XPa044sXOQBMB5DffNvuORrW05FL0Zc6um7E4BT4flE 3206
genepi/example/sample.gen sha256=PyByfOY7PneTdBILMf7JXuZJqCklORIqsb6Zkqlca3A 836349
genepi/tools/__init__.py sha256=mWA2MTHzzS0vloZRcyAeqv8rKj82NndKmKmXm0GFAgs 133
genepi/tools/createGeneRef.py sha256=nYusyjUeJTUXCdREVonf8ou148kwTsS84fV_180qWn4 3719
genepi/tools/randomized_l1.py sha256=wPZN1uVnm-FduSBW_LtH6fPnBvlWBesZA74_3Kr2qx0 26707
genepi/tools/six.py sha256=nRNOx9NbvpJyj5XPKv7GUibX-MI9BxVNF_mKohpoq3w 20701
genepi/tools/vcf2oxford.py sha256=Rjl_Hz8a1u87XghOv19LuB_aV-IO3l6vyEPYPuNLxF0 4055
genepi/tools/vcf2plot.py sha256=tR-LMtlWnpEPmTkY9-UkdA0f0K1Q9t3vTd3bxdGTR7U 8908
genepi-2.0.10.dist-info/LICENSE sha256=G5Zrao-_f-T8m4g2rKTcQt5zCXaeKE-bBVwSDu5Cx8I 1068
genepi-2.0.10.dist-info/METADATA sha256=XOTix5TMdGwqnW_TaWOltAQN2Ilhm93ktrRWUKL-udM 8358
genepi-2.0.10.dist-info/WHEEL sha256=g4nMs7d-Xl9-xC9XovUrsDHGXt-FT0E17Yqo92DEfvY 92
genepi-2.0.10.dist-info/entry_points.txt sha256=WsqSlu7AfA3GG6AMWKb_BHd740Xfx2jtb_X-FbbJ2ws 47
genepi-2.0.10.dist-info/top_level.txt sha256=PWAsDhUC1Po_vvgBpbOQFaVbPSE2GF6PiD28NXc4hlI 7
genepi-2.0.10.dist-info/RECORD — —

top_level.txt

genepi

entry_points.txt

[console_scripts]
GenEpi = genepi.GenEpi:main