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HMMSTR

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1.0.1 HMMSTR-1.0.1-cp38-cp38-manylinux_2_12_x86_64.manylinux2010_x86_64.manylinux_2_28_x86_64.whl

Wheel Details

Project: HMMSTR
Version: 1.0.1
Filename: HMMSTR-1.0.1-cp38-cp38-manylinux_2_12_x86_64.manylinux2010_x86_64.manylinux_2_28_x86_64.whl
Download: [link]
Size: 249734
MD5: 3521c0fe35556f17222890ca62e542da
SHA256: 52d77a592cba580395a32c17651335deedd526853143083a0bb5f9bb87f37ca8
Uploaded: 2024-03-22 16:48:44 +0000

dist-info

METADATA · WHEEL · RECORD · top_level.txt · entry_points.txt

METADATA

Metadata-Version: 2.1
Name: HMMSTR
Version: 1.0.1
Summary: "HMMSTR is a bioinformatics software package for calling tandem reapeat copy number from raw, long-read, sequencing reads."
Home-Page: https://github.com/Boyle-Lab/HMMSTR
Requires-Python: >=3.8.17
Requires-Dist: colorama
Requires-Dist: numpy
Requires-Dist: pandas
Requires-Dist: pickleshare
Requires-Dist: scikit-learn
Requires-Dist: scipy
Requires-Dist: seaborn
Requires-Dist: importlib-resources
Requires-Dist: mappy
License-File: LICENSE
[No description]

WHEEL

Wheel-Version: 1.0
Generator: bdist_wheel (0.41.1)
Root-Is-Purelib: false
Tag: cp38-cp38-manylinux_2_12_x86_64
Tag: cp38-cp38-manylinux2010_x86_64
Tag: cp38-cp38-manylinux_2_28_x86_64

RECORD

Path Digest Size
process_vit_res/process_vit_res.py sha256=wsOHBlOgorP-Rl_yMkV6O2XY4xpnGNCRnEGiMR-bO40 8939
process_vit_res/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
process_read/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
process_read/process_read.py sha256=mR909feRMT6XNY9FQDj1KxeBdepFiuziCBU2KT4X9VM 15578
profile_HMM/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
profile_HMM/profile_HMM.py sha256=rQ3LCeBBnaYFVaYQAlWp5MOajQou60Qj_EY9ql0pjwQ 18921
profile_HMM/data/est_072022_emissions.pkl sha256=DJsrQWDppduTeC6z624dFHJl8L4BIw2GAnuaMNvBDQk 236
profile_HMM/data/est_072022_transitions.pkl sha256=EvahumUd1rylrFMrnEkDZ3tL2N0B78bTnOi8u2bLXQM 188
c_files/hmm.pyx sha256=Usw99HT93t8tihkjde09wezOjCdv6_xJZLO7GJsORMU 8277
c_files/viterbi.c sha256=q7H7gaBpphdq3ZcxEA_dkujqc1xz2BPOwaDgsAttLxA 11790
c_files/sequence.c sha256=KymWP1o90FfWiLPh_nIhv0cWdpRjJl9sXYOSYYmUgZI 5848
c_files/hmmutils.c sha256=uh_Sp46IKOq2K4EIf9InyDdIp8UxsxrQHKlqUyxPaPc 4469
c_files/testvit.c sha256=YB5SYFj4vPxPhNxcuiMmYDXeU7RXXfIza4IEk1UsEQw 4952
c_files/hmm.c sha256=XkzITQty6cpNisQvDpSuAtRxWprSjWWOfTEtjNgrceU 309810
c_files/hmm.cpython-38-x86_64-linux-gnu.so sha256=3JCfju5TrdJivxJ3sxL5Xp-EWgzQc6acFKGTHEkjxWQ 406216
c_files/hmm.pxd sha256=gWuqi9itLq5bgh13Q4uNcNJmCPnaTSS6Qb4B8LDweNM 6369
c_files/__init__.pyx sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
c_files/nrutil.h sha256=Z1AlZZPriVrGc6wIZUWVjDJ3cFxJ4FQgA5Rki3dGzYc 764
c_files/hmmrand.c sha256=WdQoOQr42BD9Ujm20bE1I2zD1tmlihhEH6mufP0TzzM 718
c_files/test_hmm_cython.py sha256=8do976y9wMAyzDf_bFgF3TfrdWNzy387vexnWkv_iFY 421
c_files/__init__.pxd sha256=ArYSrHNg3ZRIBjBIwNd_DTvapOJw0KL9c860ZssP4q0 25
c_files/nrutil.c sha256=G-0ID7wZ9UVSkHIPBdSubga8fQVhVriitqlheczDrfw 3980
c_files/hmm.h sha256=fNKxHyBJ6byuabyJMSqpABqnwVK_iQ-Dg6YPoL92VDo 3139
KDE_stats/KDE_stats.py sha256=q3Br_IYiOcpCEaRVOcXqGXj6v3B6ylvmoMG6_O974vY 24287
KDE_stats/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
HMMSTR/HMMSTR.py sha256=5J-WmSpxFF88xZvMrrpGgOIA_V1JLfWIKhhEWK-iylk 54944
HMMSTR/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
HMMSTR/HMMSTR_v1.py sha256=gSDzYT43EydJN12_7nn0kvQatqeAGRRVhsETue1n3EQ 22159
HMMSTR-1.0.1.data/scripts/test_hmm_cython.py sha256=8do976y9wMAyzDf_bFgF3TfrdWNzy387vexnWkv_iFY 421
HMMSTR_utils/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
HMMSTR_utils/HMMSTR_utils.py sha256=iHOC3be0ptVjgPsHHHuGGHeConVLP_iCdQLl3y_gwXM 10103
HMMSTR_utils/HMMSTR_utils_v1.py sha256=R3rQ6lfJQ_wqHOrrjHfH5bwA3nGjOpPMV7w9oXDIqBQ 6334
HMMSTR-1.0.1.dist-info/entry_points.txt sha256=LWjdXj425aaweq6qTHunvf7rFWIo2XItmgqVBuGrEQY 46
HMMSTR-1.0.1.dist-info/WHEEL sha256=XfDK1qMqc_5-mGSsuJVFGtzIerZtOntYCkT5lKC94zI 185
HMMSTR-1.0.1.dist-info/top_level.txt sha256=b3q8O9X0_AQrPqU0tHM2Sic4Qkgnm3wXPLRQNIZ_m54 89
HMMSTR-1.0.1.dist-info/LICENSE sha256=WJw6zTg3RsfDhjYZZcqTw5jENyps8DNBcUR_yXC13rQ 1074
HMMSTR-1.0.1.dist-info/RECORD — —
HMMSTR-1.0.1.dist-info/METADATA sha256=c0mq9I_jLlACJCH64bt4uY8VhPaLT_wtq0q1cMp8F9g 501
GMM_stats/__init__.py sha256=47DEQpj8HBSa-_TImW-5JCeuQeRkm5NMpJWZG3hSuFU 0
GMM_stats/GMM_stats.py sha256=GkgRa4fG5Ew7FUJxKzoheOmry-_ZKLfBdofg0EoerUs 18510
GMM_stats/GMM_stats_v1.py sha256=gEp_Cmzzo-G5qUls5xUe-PfIVwBX__l6MDthWHC-lPI 16110

top_level.txt

GMM_stats
HMMSTR
HMMSTR_utils
KDE_stats
c_files
process_read
process_vit_res
profile_HMM

entry_points.txt

[console_scripts]
hmmstr = HMMSTR.HMMSTR:main