HogProf

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0.0.9 HogProf-0.0.9-py3-none-any.whl

Wheel Details

Project: HogProf
Version: 0.0.9
Filename: HogProf-0.0.9-py3-none-any.whl
Download: [link]
Size: 115557
MD5: 113ca06f2b335bc28894a1a33ac206a7
SHA256: 14d6e5ea0c83624596aeab5d51e07181bab1be6363c0bb9861b171d8807adc30
Uploaded: 2023-10-23 15:11:13 +0000

dist-info

METADATA

Metadata-Version: 2.1
Name: HogProf
Version: 0.0.9
Summary: Phylogenetic Profiling with OMA and minhashing
Author-Email: Dave Moi <dmoi[at]unil.ch>
Project-Url: Homepage, https://github.com/DessimozLab/HogProf
Project-Url: Bug Tracker, https://github.com/DessimozLab/HogProf/issues
Project-Url: Docs, https://dessimozlab.github.io/HogProf/
License: MIT License Copyright (c) 2019 David Moi Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions: The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software. THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
Classifier: Programming Language :: Python :: 3
Classifier: License :: OSI Approved :: MIT License
Classifier: Operating System :: OS Independent
Requires-Python: >=3.7
Requires-Dist: biopython
Requires-Dist: certifi
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Requires-Dist: datasketch
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Requires-Dist: future
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Requires-Dist: idna
Requires-Dist: lxml
Requires-Dist: numexpr
Requires-Dist: numpy
Requires-Dist: pandas
Requires-Dist: pyham (>=1.1.10)
Requires-Dist: pyoma
Requires-Dist: pyopa
Requires-Dist: python-dateutil
Requires-Dist: pytz
Requires-Dist: requests
Requires-Dist: scipy
Requires-Dist: six
Requires-Dist: tables
Requires-Dist: urllib3
Requires-Dist: tqdm
Description-Content-Type: text/markdown
License-File: LICENSE
[Description omitted; length: 2327 characters]

WHEEL

Wheel-Version: 1.0
Generator: bdist_wheel (0.41.2)
Root-Is-Purelib: true
Tag: py3-none-any

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top_level.txt

HogProf

entry_points.txt

lshbuilder = HogProf.lshbuilder:main